Human papillomavirus type 53 isolate LNS9504814_HPV53, complete genome
GenBank:LR862079.1
FASTA Graphics
LOCUS       LR862079                7859 bp    DNA     circular VRL 01-SEP-2020
DEFINITION  Human papillomavirus type 53 isolate LNS9504814_HPV53, complete
            genome.
ACCESSION   LR862079
VERSION     LR862079.1
DBLINK      BioProject: PRJEB39467
KEYWORDS    .
SOURCE      Human papillomavirus type 53
  ORGANISM  Human papillomavirus type 53
            Viruses; Monodnaviria; Shotokuvirae; Cossaviricota;
            Papovaviricetes; Zurhausenvirales; Papillomaviridae;
            Firstpapillomavirinae; Alphapapillomavirus; Alphapapillomavirus 6.
REFERENCE   1
  AUTHORS   Wienecke-Baldacchino K,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JUL-2020) Laboratoire National de Sante, Epidemiology
            and Microbial Genomics, 1, Rue Louis Rech, 3555 Dudelange,
            LuxembourgCOMMENT     ##Assembly-Data-START##
            Assembly Method       :: SPAdes v. 3.13.0
            Coverage              :: 29
            Sequencing Technology :: Illumina Created with VAPiDv1.6.6
                                     Reference annotations were pulled from
                                     EF546472
            ##Assembly-Data-END##FEATURES             Location/Qualifiers     source          1..7859
                     /organism="Human papillomavirus type 53"
                     /mol_type="genomic DNA"
                     /isolate="LNS9504814_HPV53"
                     /host="Homo sapiens"
                     /db_xref="taxon:333765"
                     /country="Luxembourg"
                     /note="*'isolate_source=cervical swap;
                     *'collection_date=03/11/2016"     
gene            102..566
                     /gene="E6"     
CDS             102..566
                     /gene="E6"
                     /codon_start=1
                     /product="early protein E6"
                     /protein_id="CAD1814552.1"
                     /translation="MDRQLFENTEERPRTLHQLCEVVNKPLLELQLGCVFCKKALTAS
                     EVYNFAYTDLRVVYRDGYPYGVCKFCLLFYSKVRKLRYYNCSVYGASLEELTKKKLSD
                     LSIRCYRCQHPLTPEEKQLHCDYKKRFHKISHMWTGSCLTCWRHTTATESAV"     gene            569..886
                     /gene="E7"    
CDS             569..886
                     /gene="E7"
                     /codon_start=1
                     /product="early protein E7"
                     /protein_id="CAD1814555.1"
                     /translation="MHGNVPTLPQYIIELIPQTEIDLQCHEQLNSSEDEDEDEVDHLQ
                     EQPQQARRDEQHPCYLIETQCCRCESLVQLAVQSSTKELRILQQMLMGTVELVCPLCA
                     TRR"     
gene            892..2802
                     /gene="E1"     
CDS             892..2802
                     /gene="E1"
                     /codon_start=1
                     /product="early protein E1"
                     /protein_id="CAD1814558.1"
                     /translation="MASPEGTDDEGGCRGWFHVEAIVKKRTGDVISEDETDEESTESD
                     LDGFIDNSNIISTQAERETAQQLLHAQNTHADTQTLQKLKRKYLGSPLGDISNQQTVC
                     REAVKRRLIDTEVPDSGYGNTLETVEATQQVQEQYVREASGGKEQNGGSQHSVCSRDG
                     SIGSGRDMDVDGQDIMPLQQIQDILKCSNVQAKLYCKFKDIFGIPFSELVRTFKSDST
                     CCHDWICAIFGVNETLAEALKTIIKTQCIYYHMQCLTCTWGVVILLLIRYTCGKNRKT
                     IVKSLASILNVPTEQMLVQPPKIRSPAVALYFYKTSISNISDVYGSTPEWIERQTQLQ
                     HSFEDCQFELSKMVQWAFDNEVTDDSQIAFHYAQLADVDSNAQAFLKSNMQAKYVKDC
                     GIMCRHYKRAQQQQMNMKQWIKHVCSKVDDGGDWKPIVQFLRYQGVEFISFLSYFKLF
                     LQGTPKHNCLVIYGPPNTGKSCFAMSLINFFHGSVISYVNSHSHFWLQPLDNTKLGML
                     DDATEACWKYIDEYLRNLLDGNPVSLDRKHKQLVQIKCPPVLITTNINPMQDAKLRYL
                     HSRIHVLQFLNPFPIDVNGNPVYQLNNANWKCFFERTWSRLDLDNDEDKENDGDAMPT
                     FRCVPGENSRLF"     
gene            2744..3898
                     /gene="E2"     
CDS             2744..3898
                     /gene="E2"
                     /codon_start=1
                     /product="early protein E2"
                     /protein_id="CAD1814560.1"
                     /translation="METLCQRLDACQEKILDCFERDSKNITDHIDYWKAVRQENVIYY
                     KARENNMTKLGHQVVPCLQVCKAKACVAIELQIALESLCKTEYNMEEWTLRDVCESMW
                     YTEPKQCFKKQGQHIEVWFDGSKDNRAEYVVWKWVYYCGEDGWCKVSSAVSYEGIYYI
                     HDGHKTYYTNFKDEATKYGCKGTWEVHMGKQSIYCPDSVSSTFRSNVSSVETVNEYYS
                     HKTPTTSTPVGTYEASSSLRPGKRPRTTEPDSTDSTTQSTTTARESYAECVARNTDNT
                     NNNTRKHLPGGASCNNTEIDSGYKTAPVVHIKGEANRLKCLRYRFQKHKQLFVTVSST
                     YHWTNANCAVNNSYITVVYKDETQRQKFLDIVKIPPSVSLVLGHMTCVDM"     
gene            3204..3656
                     /gene="E4"     
CDS             3204..3656
                     /gene="E4"
                     /codon_start=1
                     /product="early protein E4"
                     /protein_id="CAD1814561.1"
                     /translation="MRAYIIYMTAIKRIIQTLKTRPPNMGVKAHGKCIWENKVFIVPT
                     LCPVPLDPTYPLLKLLTNTTPIRPPPPPRPWAPTKPHHPCGRENVPEPQSPTVLTPPH
                     SPLPQPESPTQSVSQGTQTTQTTTPENTSLVELRVTTPKSTVVIRLHL"     
gene            4286..5677
                     /gene="L2"     
CDS             4286..5677
                     /gene="L2"
                     /codon_start=1
                     /product="late protein L2"
                     /protein_id="CAD1814562.1"
                     /translation="MVAHRARRRKRASATQLYQTCKQSGTCPEDVINKIEHKTWADKI
                     LQWGSLFTFFGGLGIGTGSGTGGRTGYIPLGTRPSTVVDVTPARPPIVVESVGPTDPS
                     IVTLVEESSVIESGASFPNFTGTAGFEVTSSSTTTPAVLDITPTSTSVHVSSTTYTNP
                     TFVDPPVIEVPQTGEVSGNILISTPTSGVHSYEEIPMQTFAVQGTGNEPISSTPIPGL
                     RRIAAPRLYKKAFQQVKVTDPAFLHKPETLINVDNPIFQNADTTLTFSPSGVAPDPDF
                     LDIVALHRPAFTTRRGGVRFSRLGTKATMRTRSGKQIGARVHYYYDVSPITQTEEIEM
                     QPLLSTDNTFDGLYDIYANIDDEAPVSSRFSIATPSRLPTNTVPLSFSGSTSNVTIPF
                     GTSWDVPIYSGPDVVLPTGPPTWPYAPQSPFDTTHDVVIQGSTFALWPVYFLKRRRRK
                     RIPYFLADGGVAA"     
gene            5658..7157
                     /gene="L1"     
CDS             5658..7157
                     /gene="L1"
                     /codon_start=1
                     /product="late protein L1"
                     /protein_id="CAD1814563.1"
                     /translation="MAVWRPSDSKVYLPPTPVSKVITTDAYVKRTTIFYHAGSSRLLT
                     VGHPYYPISKSGKADIPKVSAFQYRVFRVRLPDPNKFGLPDTNIFNPDQERLVWACVG
                     LEIGRGQPLGVGVSGHPLFNRLDDTESSSIAIQDTAPDSRDNVSVDPKQTQLCIIGCA
                     PAIGEHWTKGTACRSTPTTAGDCPPLELINSPIEDGDMVDTGFGALNFKALQESKSDV
                     PLDIVQSTCKYPDYLKMSADAYGDSMWFYLRREQLFTRHFFNRAGVIGEEIPNDLYIK
                     GSNGRDPPPSSVYVATPSGSMITSEAQLFNKPYWLQRAQGHNNGICWNNQLFVTVVDT
                     TRNTNMTLSATTQSMSTYNSKQIKQYVRHAEEYELQFVFQLCKISLSAEVMAYLHTMN
                     STLLEDWNIGLSPPVATSLEDKYRYVKSAAITCQKDQPPPEKQDPLSKYKFWEVNLQN
                     SFSADLDQFPLGRKFLMQVGVRTKPPVSSKKRSASTTSTSAPSSKRKRK"ORIGIN              1 gaaagtaaca atcctacttt tatagacagg gagtaaccga aataggttta ggaccgaaaa
       61 cggtacatat aaaagcactg tgtacaacac ccaggacatc catggatcgt cagttatttg
      121 aaaatacaga agagcgacca cgtacattgc accagctatg tgaagttgtg aataaaccat
      181 tgctggagct gcaacttggc tgtgtgttct gcaagaaggc attgacagcg tcagaggtat
      241 ataattttgc atatacagat ctaagagtag tgtatagaga cgggtatccg tatggagtgt
      301 gcaaattctg tttgctattt tatagtaagg tccgaaaatt aagatattat aattgttcag
      361 tgtacggggc tagcctggaa gaactaacta aaaaaaagtt atctgattta tcaataaggt
      421 gctacagatg tcaacatccg ttgacaccag aggaaaaaca gttacactgt gactataaga
      481 aacggtttca caaaatttca catatgtgga ccgggtcgtg cctgacatgc tggagacaca
      541 caacagcaac tgaatcagca gtataatcat gcacggtaac gtaccaacac ttccacaata
      601 tattatagaa cttataccac aaactgagat tgacctgcaa tgccatgagc aattgaacag
      661 ctcagaggat gaggatgagg atgaagtaga ccatctgcag gagcagccac agcaagctag
      721 acgggacgaa caacatcctt gttacctaat tgaaacacag tgttgtaggt gtgagtcgtt
      781 ggtgcagttg gctgttcaga gttcaacaaa agagctgcgt attttacaac aaatgcttat
      841 gggcacagtg gagcttgtgt gccccctctg cgcaacaagg cgataactgc aatggcgtca
      901 cctgaaggta cagatgatga ggggggatgc cggggatggt ttcacgtgga ggcaatagta
      961 aaaaaacgta caggggatgt aatatctgaa gatgaaacag acgaggaaag caccgaatct
     1021 gatttggatg ggtttataga caatagtaat ataatatcta cacaggcaga aagggagaca
     1081 gctcagcagt tgttacatgc ccaaaacaca catgcagata cacagacgct gcagaaatta
     1141 aaacgaaagt atttaggcag tccattaggt gatattagta atcagcaaac agtgtgccgg
     1201 gaagctgtaa aacgaaggct aattgataca gaagtgccgg acagcgggta tggcaatact
     1261 ttggaaacag tggaagcaac gcaacaggta caggaacagt atgtaaggga ggcaagtggc
     1321 gggaaagagc aaaatggagg ctcacaacat agtgtgtgta gcagagatgg gagcataggg
     1381 tcaggaaggg atatggatgt ggatggacag gatataatgc cactgcaaca aatacaagat
     1441 atattaaaat gtagtaatgt gcaggccaag ctatattgta aatttaaaga tatatttggc
     1501 ataccatttt cagagttggt acgaacattt aaaagtgata gtacatgttg tcatgattgg
     1561 atatgtgcta tatttggagt aaatgaaaca ttagcagagg cattaaaaac aattattaaa
     1621 acacagtgca tatattacca tatgcaatgt ttaacatgta catggggcgt ggttatatta
     1681 ttgttaatta gatatacgtg tggcaaaaac agaaaaacaa ttgtaaagtc tttagcatcc
     1741 atattaaatg taccaactga acaaatgctt gtgcagcctc caaaaatacg tagccctgca
     1801 gttgcattat acttttataa aacatctata tccaacatta gtgacgtgta tgggagtaca
     1861 ccagaatgga tagaaagaca aacacagtta caacatagct ttgaggactg tcaatttgaa
     1921 ctatctaaaa tggtgcagtg ggcatttgac aatgaagtaa ccgatgatag tcaaatagca
     1981 tttcattatg cacagttagc agatgtagac agtaatgcac aagcattttt aaaaagtaat
     2041 atgcaagcaa aatatgtaaa agactgtgga ataatgtgta gacactataa acgggcacaa
     2101 caacaacaga tgaatatgaa acaatggata aagcatgtat gtagcaaggt ggatgatggt
     2161 ggggactgga agccaatagt acagttccta aggtatcaag gggtcgagtt tatttcattt
     2221 ttaagttatt ttaaattatt tttacaaggt acaccaaaac ataattgttt agttatttat
     2281 ggtcctccaa acacgggtaa atcatgtttt gctatgagtc ttataaactt ttttcatggg
     2341 tcagtcattt catatgtaaa ttcacacagt cacttttggt tacaaccgtt agacaatact
     2401 aaattaggta tgctagatga tgccacagag gcatgttgga aatatattga tgaataccta
     2461 agaaatttat tagatggcaa tcctgtaagc ttagatagaa aacataagca actagtacaa
     2521 ataaagtgtc cacctgtact aataacaact aatataaatc caatgcaaga tgcaaagcta
     2581 cggtatttgc acagtagaat acatgtgtta cagtttttaa atccatttcc aattgatgtg
     2641 aatggaaatc ctgtatacca attaaataat gcaaactgga aatgtttttt tgaaaggaca
     2701 tggtccagat tagatttgga taacgacgaa gacaaggaaa acgatggaga cgctatgcca
     2761 acgtttagat gcgtgccagg agaaaattct agactgtttt gaaagagata gcaaaaatat
     2821 tacagaccat atagactact ggaaagctgt gcgacaagaa aatgtaatat attataaggc
     2881 aagagaaaat aatatgacta aactaggcca ccaggtggtg ccctgtttac aagtgtgtaa
     2941 agcaaaggca tgcgttgcta tagaactaca aatagcattg gaatcacttt gtaaaacaga
     3001 atataatatg gaagagtgga cattaaggga tgtatgtgaa agtatgtggt atacagaacc
     3061 caaacagtgt tttaaaaaac aaggacaaca tatagaagtg tggtttgatg gcagcaagga
     3121 caatcgggct gaatatgttg tgtggaaatg ggtatattat tgtggggagg atgggtggtg
     3181 taaagtgtct tctgcagtaa gctatgaggg catatattat atacatgacg gccataaaac
     3241 gtattataca aactttaaag acgaggccac caaatatggg tgtaaaggca catgggaagt
     3301 gcatatggga aaacaaagta tttattgtcc cgactctgtg tccagtacct ttagatccaa
     3361 cgtatcctct gttgaaactg ttaacgaata ctactcccat aagaccccca ccacctccac
     3421 gcccgtgggc acctacgaag cctcatcatc cctgcggccg ggaaaacgtc ccagaaccac
     3481 agagcccgac agtactgact ccaccacaca gtccactacc acagccagag agtcctacgc
     3541 agagtgtgtc gcaaggaaca cagacaacac aaacaacaac accagaaaac acctccctgg
     3601 tggagcttcg tgtaacaaca ccgaaatcga cagtggttat aagactgcac ctgtagtaca
     3661 tataaaaggt gaagcaaaca gactaaagtg tttaaggtat cggtttcaaa aacataaaca
     3721 actgtttgtt actgtatcat ccacctatca ttggacaaat gcaaactgtg ctgtaaataa
     3781 tagttatatt actgttgtat ataaagatga aacccaacgc caaaaatttt tggatattgt
     3841 aaaaataccc cctagtgtat cactggtact gggacatatg acatgtgttg atatgtaatg
     3901 ttaatgtaat tgttacatta tgtaatattg tattacaata atacctggta tatacaatac
     3961 tacacacgcc atatatgctg ctaggcctgt aaacttgcaa ccattgtgtt gtgtgttagt
     4021 tttgtgtttt tgctttgctg ctttgtgtgc ctgtttgtct gctttaatgt gccgctattg
     4081 cagtctgcct ctgtgtttgc ctcgtgtata ttacttatac ttttattttg gtttgttgtg
     4141 gcatcatcct acataaccac atttacacta tatatacttt ttttttactt ccctttatta
     4201 tgtttctata gccatgctgt gtggttaatt aacacacaat aaatcacagt ttttttgtat
     4261 tgtatgtatt tgtgtgttat atataatggt tgcccaccgg gcacgcagac gtaagcgggc
     4321 atcagcaacg cagctatatc aaacatgtaa acaatctggc acatgtcctg aggatgttat
     4381 taacaaaatt gaacacaaaa cctgggctga taaaatattg caatggggta gtttatttac
     4441 attttttgga ggccttggta ttggcactgg ctctggcact ggggggcgta caggatatat
     4501 tcctttgggt actaggcctt ccactgttgt tgatgtaacc cctgctcggc cccctattgt
     4561 tgtagaatcg gtaggcccca ctgacccttc tattgttaca ttggttgaag aatccagtgt
     4621 tattgagtct ggagcttcgt tccctaattt tacaggtact gcaggatttg aagtaacatc
     4681 ctcctcaact accacacctg cagtattaga tatcacaccc acctctacct ctgtacatgt
     4741 tagttctact acatatacta atcccacatt tgtagaccct cctgttattg aggtccccca
     4801 aactggtgag gtatctggga atatattgat aagtacccca acatctgggg ttcatagtta
     4861 tgaggaaata cctatgcaaa catttgctgt tcagggtaca ggcaatgaac ctatcagtag
     4921 tactcctatt cctggtctta ggcgtatagc tgccccacgt ttatataaaa aagcctttca
     4981 acaggttaag gtcacagatc ctgcatttct tcacaaacct gaaactttaa ttaatgttga
     5041 taatcccata tttcaaaatg ctgacacaac gttaaccttt tcaccatcag gtgtggcacc
     5101 tgatcctgat tttttagaca ttgtggcttt acacagacct gcctttacaa cacgtagagg
     5161 tggtgtgcgt tttagtaggc ttggcacaaa ggccactatg cgcaccagaa gtggcaaaca
     5221 aataggtgct cgtgtacatt attattatga tgtcagtcct attacacaga ctgaagaaat
     5281 tgaaatgcag ccattattgt ctacagataa tacatttgat ggcctatatg atatttatgc
     5341 aaacatagat gatgaggcac ctgtgtcatc tcgtttttct attgctacac cttctaggtt
     5401 gcctaccaac actgttcctt tgtcttttag tggtagtacc tctaatgtta caataccctt
     5461 tggtacatct tgggatgttc ccatctattc aggtcccgat gtagtgttgc ccacaggacc
     5521 ccctacatgg ccttatgcac ctcaatctcc ttttgatacc acccatgatg tagttataca
     5581 gggctccaca tttgcgttat ggcctgttta ttttttgaaa cgtaggcgtc gtaaacgtat
     5641 tccctatttt cttgcagatg gcggtgtggc ggcctagtga cagcaaggtt tatctgcctc
     5701 ctacccctgt atcaaaggtc attacaacgg atgcctatgt aaaacgcacc actatatttt
     5761 atcatgctgg aagctctcgc ttgcttaccg tgggacatcc ttattacccc atttctaaat
     5821 ctggtaaagc agacatccct aaggtgtctg catttcagta tagggtgttt agagtacgcc
     5881 tcccagatcc taataagttt ggccttcctg atacaaatat atttaatcct gaccaggagc
     5941 ggcttgtatg ggcctgtgta gggctagaga ttggccgtgg acagccttta ggtgttggtg
     6001 taagtggcca tccactgttc aataggttgg atgacactga aagctctagt atagctattc
     6061 aggatactgc cccggacagt agggataatg tttcagtgga tcctaaacaa acacagttat
     6121 gcattattgg ctgtgcaccc gctataggtg aacactggac aaagggtacg gcctgtcgtt
     6181 ccacacctac tacagcgggc gactgccccc cattggaact tatcaattca cctattgagg
     6241 atggagacat ggtggacaca ggttttggtg cattaaactt taaagctttg caggaatcta
     6301 aatctgatgt gccattggat attgtacaat ccacatgtaa atatcccgat tatttgaaaa
     6361 tgagtgcaga tgcctatggg gattctatgt ggttttattt acgtagggaa cagttgttta
     6421 ccagacattt ttttaatagg gcaggcgtta ttggtgagga aatacctaat gacttatata
     6481 ttaagggtag taatggcagg gacccgcccc ctagctctgt atatgttgct acacctagtg
     6541 ggtctatgat aacttcagag gctcaattgt ttaataagcc atattggctg caacgtgccc
     6601 agggacataa taatggcatc tgttggaaca atcagttatt tgtaactgtt gtggatacca
     6661 ccaggaatac aaacatgact ctttccgcaa ccacacagtc tatgtctaca tataattcaa
     6721 agcaaattaa acagtatgtt agacatgcag aggaatatga attacaattt gtgtttcaac
     6781 tatgtaaaat atccctgtct gctgaggtta tggcctattt acatactatg aattctacct
     6841 tactggaaga ctggaatata ggtttgtcgc ctcctgttgc cactagctta gaggacaaat
     6901 acagatatgt gaaaagtgca gctataacct gtcaaaagga tcagccccct cctgaaaagc
     6961 aggacccact atctaaatat aaattttggg aggtcaattt gcaaaacagt ttttctgctg
     7021 atttggatca gtttcctctt ggcaggaagt ttttaatgca ggttggggtc cgtactaaac
     7081 cgcctgtatc ctctaaaaaa cgctctgctt ctactacatc tacctcagcc ccctcctcca
     7141 agcgcaaacg caaatag
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