Tomato brown rugose fruit virus isolate Tom1-Jo, complete genome
GenBank: KT383474.1
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LOCUS       KT383474                6393 bp ss-RNA     linear   VRL 26-MAY-2016
DEFINITION  Tomato brown rugose fruit virus isolate Tom1-Jo, complete genome.
ACCESSION   KT383474
VERSION     KT383474.1
KEYWORDS    .
SOURCE      Tomato brown rugose fruit virus
  ORGANISM  Tomato brown rugose fruit virus
            Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes;
            Martellivirales; Virgaviridae; Tobamovirus.
REFERENCE   1  (bases 1 to 6393)
  AUTHORS   Salem,N., Mansour,A., Ciuffo,M., Falk,B.W. and Turina,M.
  TITLE     A new tobamovirus infecting tomato crops in Jordan
  JOURNAL   Arch. Virol. 161 (2), 503-506 (2016)
   PUBMED   26586328
REFERENCE   2  (bases 1 to 6393)
  AUTHORS   Salem,N.M., Mansour,A.N., Ciuffo,M., Falk,B.W. and Turina,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-AUG-2015) Istituto per la Protezione Sostenibile
            Delle Piante, CNR Torino, Italy, Strada delle Cacce 73, Torino, TO
            10135, ItalyCOMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##FEATURES             Location/Qualifiers     source          1..6393
                     /organism="Tomato brown rugose fruit virus"
                     /mol_type="genomic RNA"
                     /isolate="Tom1-Jo"
                     /host="tomato; cultivar=Candela"
                     /db_xref="taxon:1761477"
                     /country="Jordan"
                     /collection_date="17-Apr-2015"     CDS             77..4924
                     /codon_start=1
                     /transl_except=(pos:3425..3427,aa:OTHER)
                     /product="183 kDa replicase"
                     /protein_id="ALP48476.1"
                     /translation="MAYTQTATTSALLDTVRGNNTLVNDLAKRRLYDTAVDEFNARDR
                     RPKVNFSKVISEEQTLIATRAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYG
                     SLTYDIGGNFASHLFKGRAYVHCCMPNLDVRDIMRHEGQKDSIELYLSRLERGNKVVP
                     NFQKEAFDRYAETPDEVVCHSTFQTCTHQQVENTGRVYAIALHSIYDIPADEFGAALL
                     RKNVHVCYAAFHFSENLLLEDSHVNLDEINACFSRDGDKLTFSFASESTLNYCHSYSN
                     ILKYVCKTYFPASNREVYMKEFLVTRVNTWFCKFSRIDTFLLYKGVAHKGVNSEQFYS
                     AMEDAWHYKKTLAMCNSERILLEDSSSVNYWFPKMRDMVIVPLFDISLDTSKRTRKEV
                     LVSKDFVFTVLNHIRTYQAKALTYSNVLSFVESIRSRVIINGVTARSEWDVDKSLLQS
                     LSMTFFLHTKLAVLKDELLISKFSLGPKSVSQHVWDEISLAFGNAFPSIKERLLNRKL
                     IKVSGDALEIRVPDLYVTFHDRLVTEYKTSVDMPVLDIRKRMEETEVMYNALSELSVL
                     KESDKFDVDVFSRMCQTLEVDPMTAAKVIVAVMSNESGLTLTFEQPTEANVALALKDS
                     EKASEGALVVTSRDVEEPSMKGSMARGELQLAGLSGDQPESSYTRNEEIESLEQFHMA
                     TASSLIRKQMSSIVYTGPIKVQQMKNFIDSLVASLSAAVSNLVKILKDTAAIDLETRQ
                     KFGVLDVATKRWLIKPLAKNHAWGVIETHARKYHVALLEYDEHGVVTCDSWRRVAVSS
                     ESMVYSDMAKLRTLRRLLRDGEPHVSSAKVVLVDGVPGCGKTKEILSKVNFEEDLILV
                     PGKQAAEMIKRRANASGIIQATRDNVRTVDSFIMNYGKGTRCQFKRLFIDEGLMLHTG
                     CVNFLVSMSLCEIAYVYGDTQQIPYINRVSGFPYPAHFAKIEVDEVETRRTTLRCPAD
                     ITHYLNRRYEGYVMCTSSVKKSVSQEMVSGAAMINPVSKPLNGKVLTFTQSDKEALLS
                     RGYTDVHTVHEVQGETYADVSLVRLTPTPVSIIAGDSPHVLVALSRHTQTLKYYTVVM
                     DPLVSIIRDLEKLSSYLLDMYKVDAGTQXQLQVDSVFKGSNLFVAAPKTGDISDMQFY
                     YDKCLPGNSTMLNNYDAVTMRLTDISLNVKDCILDFSKSVAAPKDPIKPLIPMVRTAA
                     EMPRQTGLLENLVAMIKRNFNSPELSGIIDIENTASLVVDKFFDSYLLKEKRKPNKNV
                     SLFCRESLNRWLEKQEQVTIGQLADFDFVDLPAVDQYRHMIKAQPKQKLDTSIQSEYP
                     ALQTIVYHSKKINAIFGPLFSELTRQMLESIDSSKFLFFTRKTPAQIEDFFGDLDSHV
                     PMDILELDISKYDKSQNEFHCAVEYEIWRRLGLEDFLGEVWKQGHRKTTLKDYTAGIK
                     TCLWYQRKSGDVTTFIGNTVIIAACLASMLPMEKIIKGAFCGDDSLLYFPKGCEFPDI
                     QHTANLMWNFEAKLFRKQYGYFCGRYVIHHDRGCIVYYDPLKLISKLGAKHIKDWDHL
                     EEFRRSLCDVANSLNNCAYYTQLDDAVSEVHKTAPPGSFVYKSLVKYLSDKVLFRSLF
                     IDGSC"     CDS             77..3427
                     /codon_start=1
                     /product="126 kDa replicase"
                     /protein_id="ALP48477.1"
                     /translation="MAYTQTATTSALLDTVRGNNTLVNDLAKRRLYDTAVDEFNARDR
                     RPKVNFSKVISEEQTLIATRAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYG
                     SLTYDIGGNFASHLFKGRAYVHCCMPNLDVRDIMRHEGQKDSIELYLSRLERGNKVVP
                     NFQKEAFDRYAETPDEVVCHSTFQTCTHQQVENTGRVYAIALHSIYDIPADEFGAALL
                     RKNVHVCYAAFHFSENLLLEDSHVNLDEINACFSRDGDKLTFSFASESTLNYCHSYSN
                     ILKYVCKTYFPASNREVYMKEFLVTRVNTWFCKFSRIDTFLLYKGVAHKGVNSEQFYS
                     AMEDAWHYKKTLAMCNSERILLEDSSSVNYWFPKMRDMVIVPLFDISLDTSKRTRKEV
                     LVSKDFVFTVLNHIRTYQAKALTYSNVLSFVESIRSRVIINGVTARSEWDVDKSLLQS
                     LSMTFFLHTKLAVLKDELLISKFSLGPKSVSQHVWDEISLAFGNAFPSIKERLLNRKL
                     IKVSGDALEIRVPDLYVTFHDRLVTEYKTSVDMPVLDIRKRMEETEVMYNALSELSVL
                     KESDKFDVDVFSRMCQTLEVDPMTAAKVIVAVMSNESGLTLTFEQPTEANVALALKDS
                     EKASEGALVVTSRDVEEPSMKGSMARGELQLAGLSGDQPESSYTRNEEIESLEQFHMA
                     TASSLIRKQMSSIVYTGPIKVQQMKNFIDSLVASLSAAVSNLVKILKDTAAIDLETRQ
                     KFGVLDVATKRWLIKPLAKNHAWGVIETHARKYHVALLEYDEHGVVTCDSWRRVAVSS
                     ESMVYSDMAKLRTLRRLLRDGEPHVSSAKVVLVDGVPGCGKTKEILSKVNFEEDLILV
                     PGKQAAEMIKRRANASGIIQATRDNVRTVDSFIMNYGKGTRCQFKRLFIDEGLMLHTG
                     CVNFLVSMSLCEIAYVYGDTQQIPYINRVSGFPYPAHFAKIEVDEVETRRTTLRCPAD
                     ITHYLNRRYEGYVMCTSSVKKSVSQEMVSGAAMINPVSKPLNGKVLTFTQSDKEALLS
                     RGYTDVHTVHEVQGETYADVSLVRLTPTPVSIIAGDSPHVLVALSRHTQTLKYYTVVM
                     DPLVSIIRDLEKLSSYLLDMYKVDAGTQ"     CDS             4911..5711
                     /codon_start=1
                     /product="30 kDa movement protein"
                     /protein_id="ALP48478.1"
                     /translation="MALVKGKVNINEFIDLSKSEKFLPSMFTPVKSVMISKVDKILVH
                     EDESLSEVNLLKGVKLIDGGYVHLAGLVVTGEWNLPDNCRGGVSVCLVDKRMERADEA
                     TLASYYTAAAKKRFQFKVVPNYNITTKDAEKAVWQVLVNIRNVKIAAGYCPLSLEFVS
                     VCIVYKNIIKLGLREKITSVTDGGPMELSEEVVDEFMEEVPMSVRLAKFRSKTGKKFS
                     SKSENNSGNNRPKPDKNQRKEKGLKVRVEKDNLIDNELETYVADSDSY"     CDS             5714..6193
                     /codon_start=1
                     /product="17.5 kDa coat protein"
                     /protein_id="ALP48479.1"
                     /translation="MSYTIATPSQFVFLSSAWADPIELINLCTNSLGNQFQTQQARTT
                     VQRQFSEVWKPVPQVTVRFPDSGFKVYRYNAVLDPLVTALLGAFDTRNRIIEVENQAN
                     PTTAETLDATRRVDDATVAIRSAINNLVVELVKGTGLYNQSTFESASGLQWSSAPAS"ORIGIN       
       1 gtatttttgt tttacaacat ataccaacaa caacaaacaa caaacaacaa cattacaatt
       61 actatttaca actacaatgg catacacaca gacagctacc acatccgctt tgctcgacac
      121 tgtccgaggt aacaatacct tggtcaacga tcttgcgaag cggcgtcttt atgacacagc
      181 ggtcgacgag ttcaacgctc gtgatcgcag gcccaaagta aatttttcca aagtaataag
      241 tgaggaacag acgcttattg ctactagggc atatccagaa ttccagataa ccttctataa
      301 tacgcagaac gccgtgcatt cgcttgccgg tggactacga tccttagaac tggaatatct
      361 aatgatgcag atcccgtacg gatcactcac atatgatata ggtgggaatt ttgcatctca
      421 tctgttcaaa ggacgggcat atgttcactg ctgtatgccc aatcttgatg tccgcgacat
      481 aatgcggcac gaaggccaga aagacagtat agaattatac ctttccaggc ttgagcgggg
      541 caacaaagtt gtcccaaatt tccaaaagga agcttttgac agatacgctg aaacgccaga
      601 cgaagttgtc tgtcacagta ccttccaaac gtgtacgcac cagcaggtgg aaaacacagg
      661 cagggtgtat gctattgcat tgcacagtat atacgatata cctgctgatg aattcggagc
      721 ggcactttta aggaaaaatg tccatgtttg ttacgccgcc ttccactttt ccgagaattt
      781 acttctcgaa gattcacacg tcaaccttga cgaaatcaac gcgtgttttt cgcgtgatgg
      841 agacaagctg actttttctt tcgcatctga gagcacttta aattattgtc atagttattc
      901 taatatttta aaatacgtgt gcaaaactta cttcccggca tctaatagag aggtctacat
      961 gaaggagttt ttggtcacca gggttaacac ctggttttgt aagttttcta ggatagatac
     1021 ttttttatta tacaaggggg tagcccacaa aggtgtaaat agtgagcaat tttacagcgc
     1081 aatggaagat gcatggcact acaaaaagac tcttgcaatg tgtaacagcg agaggattct
     1141 tcttgaagat tcctcatcgg tcaattactg gttcccaaaa atgagagata tggtcatagt
     1201 tcctctattc gacatatctc tcgacaccag taaaaggacc cgcaaagaag tcttagtgtc
     1261 aaaggatttt gtattcacag ttttaaatca cattcgcact tatcaagcca aggcacttac
     1321 atactccaat gttttatcct ttgtcgaatc aattcgttca agggtaatta tcaacggagt
     1381 gactgccagg tctgagtggg atgttgacaa atctcttttg caatccttgt ccatgacatt
     1441 tttcttgcat actaagcttg ccgttttaaa agacgaattg ttaatcagca agtttagttt
     1501 ggggccaaaa tcagtaagcc agcatgtatg ggatgagatt tccctggctt ttggaaacgc
     1561 atttccatcg atcaaggaga gactgctaaa tcggaaacta attaaagtgt cgggagacgc
     1621 attagaaatc agggtgcctg atttatatgt gacttttcac gatagattag tgactgagta
     1681 caaaacatcg gtggatatgc cagtgcttga tatcagaaag agaatggagg agactgaggt
     1741 tatgtacaat gcattgtctg agctatctgt gctcaaggag tcggacaagt tcgacgttga
     1801 tgttttttcc cggatgtgcc agactttgga ggtagaccca atgactgcag caaaggttat
     1861 tgtggcagtg atgagcaacg agagcggact gactcttaca ttcgaacagc caactgaagc
     1921 aaatgtcgca ttggcactta aagattcaga aaaagcctct gagggtgcac tagtggttac
     1981 ttctagagat gttgaagaac catccatgaa gggttcaatg gcaagaggag agttacaatt
     2041 ggccggtctg tctggagacc aaccagagtc ttcctatact cggaacgagg aaatagagtc
     2101 attagagcaa ttccacatgg caacggctag ttcgttaatt cggaaacaga tgagttcgat
     2161 tgtgtacacg ggccccatta aagttcagca aatgaaaaac tttattgata gcctggtagc
     2221 atcactctct gctgcggtgt cgaacctagt caagatccta aaggatacag ctgctataga
     2281 tctcgaaacc cgtcagaagt ttggagtctt agatgttgcg accaaaagat ggttaattaa
     2341 acctttagcc aagaatcacg catggggcgt tattgaaaca catgctagga agtaccacgt
     2401 tgcacttttg gagtatgatg agcatggagt ggtaacttgc gacagttgga gaagggtggc
     2461 cgtgagttct gagtcaatgg tttattctga tatggcaaag ctcagaacac tgaggagatt
     2521 attaagagat ggtgagcctc atgtcagcag tgctaaagtc gtcctagttg acggtgtccc
     2581 gggttgtgga aagacaaaag agattctctc gaaagtaaat tttgaggaag atctaatctt
     2641 agtaccgggt aagcaggctg ctgaaatgat aaagaggcgt gctaatgcgt caggaataat
     2701 tcaagccaca agagataatg ttcgtactgt tgattcattt ataatgaatt acggtaaagg
     2761 aacacgctgt cagttcaaaa ggttatttat cgacgaaggt ctgatgttgc acactggttg
     2821 tgtgaatttt cttgtttcta tgtctctgtg cgaaattgca tatgtttatg gagacacaca
     2881 acaaattcca tacatcaaca gagtatccgg ttttccgtac cctgcacatt ttgcaaaaat
     2941 agaggttgat gaggtggaaa ctcgcagaac tacgctgcgt tgtccagccg acattaccca
     3001 ctatcttaac agaaggtacg aaggatatgt catgtgtaca tcgtcggtta aaaagtcagt
     3061 ttctcaggaa atggtgagcg gggccgcaat gatcaatcct gtatctaagc cattgaatgg
     3121 gaaagttttg actttcactc agtctgataa agaggcgctg ctttctcgag gatatacgga
     3181 cgtccataca gtacatgagg tacaaggtga gacatatgca gatgtgtcgt tggtcagatt
     3241 gactccgaca cctgtatcta tcatcgcagg agatagtccg cacgttctcg tagctttgtc
     3301 aaggcatacc caaacattga agtattacac cgtagtgatg gatcctcttg taagtataat
     3361 tagggattta gaaaaactta gttcttactt gttagatatg tataaagtag atgcagggac
     3421 ccaatagcaa ttacaggtag actccgtgtt taaaggttct aatctttttg ttgcagcacc
     3481 aaagactgga gatatctcag atatgcaatt ttactatgat aagtgtctcc caggtaatag
     3541 caccatgtta aataactatg atgctgttac catgaggttg actgacattt ctcttaatgt
     3601 caaagattgc atattggatt tctctaagtc tgtggctgca ccgaaggatc cgatcaaacc
     3661 actgattccg atggtacgaa cggcggcaga aatgccacgc cagactggac tattggaaaa
     3721 tttggtggcg atgatcaaaa gaaactttaa ttcaccggag ttatcaggaa taatcgacat
     3781 tgagaatact gcatctttag tagtagataa attttttgat agttacttgc ttaaagaaaa
     3841 aagaaaacca aataaaaatg tttctttatt ttgtagagag tctctcaata gatggttaga
     3901 gaagcaggag caagtgacca ttggtcagct tgcagatttt gattttgtgg atcttcctgc
     3961 cgttgatcag tacaggcata tgattaaagc gcaacctaag cagaagctgg atacatcaat
     4021 tcaaagcgaa tatccggcct tgcagacgat tgtgtatcat tcgaaaaaga tcaacgcaat
     4081 cttcggtcct ttgttcagtg agctcacaag gcaaatgctc gaaagcatag actcaagtaa
     4141 gtttttgttc tttacaagga agacgccagc tcaaattgag gatttcttcg gagatctcga
     4201 tagccatgtc cctatggata tcttggagtt ggatatttcg aagtatgaca aatctcagaa
     4261 cgagttccac tgtgcagtag agtatgaaat atggagaaga cttggattag aagattttct
     4321 gggagaagtt tggaaacaag gccacaggaa aactactctt aaagattaca cagctggtat
     4381 taaaacgtgt ttatggtacc agagaaagag tggggacgtt acaacattca tcggtaatac
     4441 ggtgattatt gctgcttgtt tagcttccat gttgcccatg gagaaaataa tcaaaggtgc
     4501 attttgcgga gatgacagtt tactatactt cccaaaaggt tgtgagtttc ctgacataca
     4561 gcatacagcc aaccttatgt ggaatttcga ggctaagcta ttcagaaagc agtatggtta
     4621 tttctgtgga aggtacgtga tacatcatga cagagggtgt attgtttatt atgacccttt
     4681 gaagttgatt tctaaacttg gtgctaaaca catcaaggat tgggatcact tagaagagtt
     4741 cagaagatcc ctttgtgatg ttgcaaattc gttgaacaac tgtgcgtatt acacgcagtt
     4801 ggacgacgct gtgagtgagg tccataaaac cgcacccccg ggttcgtttg tatataaaag
     4861 tttagttaaa tatctgtccg ataaggttct ttttagaagt ttgtttatag atggctcttg
     4921 ttaagggtaa agtcaatatt aatgagttca tagacttgtc aaaatcagaa aaatttcttc
     4981 cgtctatgtt cacacctgtt aagagtgtca tgatctccaa ggttgataag atattggttc
     5041 atgaagatga atctttgtcc gaagtcaatt tactcaaagg tgtaaaactc attgatggtg
     5101 gctatgtaca tcttgctggt cttgtggtga caggtgaatg gaatttgcca gataattgtc
     5161 gtggtggtgt cagtgtctgt ttggtcgata agagaatgga gagagcggac gaggcaactc
     5221 ttgcttcata ctataccgca gcggctaaga aaaggtttca gttcaaagtc gttccaaatt
     5281 acaacatcac taccaaggac gcagaaaagg cagtttggca agtactagtt aatattagaa
     5341 atgttaaaat tgctgcgggt tactgtccgc tgtcattaga atttgtgtca gtgtgtattg
     5401 tttataaaaa tattataaaa ctcggtttga gagagaaaat tacgagcgtc acggatggag
     5461 ggcccatgga actatcagaa gaagttgttg atgagttcat ggaagaagtc ccgatgtctg
     5521 taaggcttgc aaaatttcgt tcgaagaccg gaaaaaagtt tagtagtaaa agtgagaata
     5581 atagtggtaa taataggccg aaaccagaca aaaaccaaag gaaggaaaag ggtttaaaag
     5641 ttagggttga gaaggataat ttaattgata atgaattgga gacttacgtc gccgattcag
     5701 attcgtatta aatatgtctt acacaatcgc aactccatcg caatttgtgt ttttgtcatc
     5761 agcatgggcc gaccctatag aattaataaa tttatgtact aattcactag gtaatcagtt
     5821 ccaaacacaa caagctagaa caaccgttca acggcaattt agcgaagtgt ggaaacctgt
     5881 ccctcaagtc actgttaggt ttcctgacag tggttttaag gtgtataggt acaatgcggt
     5941 actagatcct ctagttactg ctttgttagg agctttcgat actagaaata ggattataga
     6001 agtcgaaaat caggcgaacc cgacaaccgc cgaaacgtta gacgctactc gtagagtaga
     6061 tgacgcaacg gtggctataa ggagcgctat aaataattta gtagtagaat tggtcaaagg
     6121 aacaggtttg tacaatcaga gcacatttga aagtgcatcc ggtttacaat ggtcctctgc
     6181 acctgcatct tgagataatc gagatgctta aataacagat tgtgtctgca aacacacgtg
     6241 gtacgtacga taacgtatag tgtttttccc tccacttaaa tcgaagggta gtgtcttgga
     6301 gcgcgcggga caaatgtgta tggttcatac acatccgtag gcacgtaata aagcgaggga
     6361 ttcgaattcc cccggaaccc ccggaggggc cca
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