Human papillomavirus type 56 genomic DNA
GenBank: X74483.1
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LOCUS       X74483                  7844 bp    DNA     linear   VRL 26-JUL-2016
DEFINITION  Human papillomavirus type 56 genomic DNA.
ACCESSION   X74483
VERSION     X74483.1
KEYWORDS    E1 gene; E2 gene; E4 gene; E6 gene; E7 gene; early protein; L1
            gene; L2 gene; late protein.
SOURCE      human papillomavirus 56
  ORGANISM  human papillomavirus 56
            Viruses; Monodnaviria; Shotokuvirae; Cossaviricota;
            Papovaviricetes; Zurhausenvirales; Papillomaviridae;
            Firstpapillomavirinae; Alphapapillomavirus.
REFERENCE   1  (bases 1 to 7844)
  AUTHORS   Delius,H. and Hofmann,B.
  TITLE     Primer-directed sequencing of human papillomavirus types
  JOURNAL   Curr. Top. Microbiol. Immunol. 186, 13-31 (1994)
   PUBMED   8205838
REFERENCE   2  (bases 1 to 7844)
  AUTHORS   Delius,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-AUG-1993) H. Delius, Deutsches
            Krebsforschungszentrum, Abteilung ATV, Im Neuenheimer Feld 506, W
            6900 Heidelberg, FRG
COMMENT     The HPV56 E1 open reading frame is fragmented.
FEATURES             Location/Qualifiers
     source          1..7844
                     /organism="human papillomavirus 56"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:10596"
                     /clone="insert in BamHI site of pT713"
     gene            102..>566
                     /gene="E6"
     CDS             102..>566
                     /gene="E6"
                     /codon_start=1
                     /product="envelope protein"
                     /protein_id="CAA52596.1"
                     /db_xref="GOA:P24836"
                     /db_xref="InterPro:IPR001334"
                     /db_xref="UniProtKB/Swiss-Prot:P24836"
                     /translation="MEPQFNNPQERPRSLHHLSEVLEIPLIDLRLSCVYCKKELTRAE
                     VYNFACTELKLVYRDDFPYAVCRVCLLFYSKVRKYRYYDYSVYGATLESITKKQLCDL
                     LIRCYRCQSPLTPEEKQLHCDRKRRFHLIAHGWTGSCLGCWRQTSREPRESTV"
     gene            572..889
                     /gene="E7"
     CDS             572..889
                     /gene="E7"
                     /codon_start=1
                     /product="envelope protein"
                     /protein_id="CAA52597.1"
                     /db_xref="GOA:P36833"
                     /db_xref="InterPro:IPR000148"
                     /db_xref="UniProtKB/Swiss-Prot:P36833"
                     /translation="MHGKVPTLQDVVLELTPQTEIDLQCNEQLDSSEDEDEDEVDHLQ
                     ERPQQARQAKQHTCYLIHVPCCECKFVVQLDIQSTKEDLRVVQQLLMGALTVTCPLCA
                     SSN"
     gene            2918..3850
                     /gene="E2"
     CDS             2918..3850
                     /gene="E2"
                     /codon_start=1
                     /product="envelope protein"
                     /protein_id="CAA52598.1"
                     /db_xref="GOA:P36798"
                     /db_xref="InterPro:IPR000427"
                     /db_xref="InterPro:IPR001866"
                     /db_xref="InterPro:IPR009021"
                     /db_xref="InterPro:IPR012677"
                     /db_xref="UniProtKB/Swiss-Prot:P36798"
                     /translation="MVPCLQVCKAKACSAIEVQIALESLSTTIYNNEEWTLRDTCEEL
                     WLTEPKKCFKKEGQHIEVWFDGSKNNCMQYVAWKYIYYNGDCGWQKVCSGVDYRGIYY
                     VHDGHKTYYTDFEQEAKKFGCKNIWEVHMENESIYCPDSVSSTCRYNVSPVETVNEYN
                     THKTTTTTSTSVGNQDAAVSHRPGKRPRLRESEFDSSRESHAKCVTTHTHISDTDNTD
                     SRSRSINNNNHPGDKTTPVVHLKGEPNRLKCCRYRFQKYKTLFVDVTSTYHWTSTDNK
                     NYSIITIIYKDETQRNSFLSHVKIPVVYRLVWDK"
     gene            4222..5616
                     /gene="L2"
     CDS             4222..5616
                     /gene="L2"
                     /codon_start=1
                     /product="late protein"
                     /protein_id="CAA52599.1"
                     /db_xref="GOA:P36765"
                     /db_xref="InterPro:IPR000784"
                     /db_xref="UniProtKB/Swiss-Prot:P36765"
                     /translation="MVAHRATRRKRASATQLYKTCKLSGTCPEDVVNKIEQKTWADKI
                     LQWGSLFTYFGGLGIGTGTGSGGRAGYVPLGSRPSTIVDVTPARPPIVVESVGPTDPS
                     IVTLVEESSVIESGAGIPNFTGSGGFEITSSSTTTPAVLDITPTSSTVHVSSTHITNP
                     LFIDPPVIEAPQTGEVSGNILISTPTSGIHSYEEIPMQTFAVHGSGTEPISSTPIPGF
                     RRIAAPRLYRKAFQQVKVTDPAFLDRPATLVSADNPLFEGTDTSLAFSPSGVAPDPDF
                     MNIVALHRPAFTTRRGGVRFSRLGRKATIQTRRGTQIGARVHYYYDISPIAQAEEIEM
                     QPLLSANNSFDGLYDIYANIDDEAPGLSSQSVATPSAHLPIKPSTLSFASNTTNVTAP
                     LGNVWETPFYSGPDIVLPTGPSTWPFVPQSPYDVTHDVYIQGSSFALWPVYFFRRRRR
                     KRIPYFFADGDVAA"
     gene            5492..7096
                     /gene="L1"
     CDS             5492..7096
                     /gene="L1"
                     /codon_start=1
                     /product="late protein"
                     /protein_id="CAA52600.1"
                     /db_xref="GOA:P36743"
                     /db_xref="InterPro:IPR002210"
                     /db_xref="InterPro:IPR011222"
                     /db_xref="UniProtKB/Swiss-Prot:P36743"
                     /translation="MMLPMMYIYRDPPLHYGLCIFLDVGAVNVFPIFLQMATWRPSEN
                     KVYLPPTPVSKVVATDSYVKRTSIFYHAGSSRLLAVGHPYYSVTKDNTKTNIPKVSAY
                     QYRVFRVRLPDPNKFGLPDTNIYNPDQERLVWACVGLEVGRGQPLGAGLSGHPLFNRL
                     DDTESSNLANNNVIEDSRDNISVDGKQTQLCIVGCTPAMGEHWTKGAVCKSTQVTTGD
                     CPPLALINTPIEDGDMIDTGFGAMDFKVLQESKAEVPLDIVQSTCKYPDYLKMSADAY
                     GDSMWFYLRREQLFARHYFNRAGKVGETIPAELYLKGSNGREPPPSSVYVATPSGSMI
                     TSEAQLFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMTISTATEQLSKYDARK
                     INQYLRHVEEYELQFVFQLCKITLSAEVMAYLHNMNANLLEDWNIGLSPPVATSLEDK
                     YRYVRSTAITCQREQPPTEKQDPLAKYKFWDVNLQDSFSTDLDQFPLGRKFLMQLGTR
                     SKPAVATSKKRSAPTSTSTPAKRKRR"
ORIGIN      
        1 gaaagtttca atcatacttt tatatattgg gagtgaccga aaagggttta agaccgaaaa
       61 cggtacatat aaaaggcagc ttattctgtg tggacatatc catggagcca caattcaaca
      121 atccacagga acgtccacga agcctgcacc acttgagtga ggtattagaa atacctttaa
      181 ttgatcttag attatcatgt gtatattgca aaaaagaact aacacgtgct gaggtatata
      241 attttgcatg cactgaatta aaattagtgt atagggatga ttttccttat gcagtgtgca
      301 gagtatgttt attgttttat agtaaagtta gaaaatatag gtattatgac tattcagtgt
      361 atggagctac actagaaagt ataactaaaa aacagttatg tgatttatta ataaggtgct
      421 acagatgtca aagtccgtta actccggagg aaaagcaatt gcattgtgac agaaaaagac
      481 gatttcatct aatagcacat ggttggaccg ggtcatgttt ggggtgctgg agacaaacat
      541 ctagagaacc tagagaatct acagtataat catgcatggt aaagtaccaa cgctgcaaga
      601 cgttgtatta gaactaacac ctcaaacaga aattgaccta cagtgcaatg agcaattgga
      661 cagctcagag gatgaggatg aggatgaagt agaccatttg caggagcggc cacagcaagc
      721 tagacaagct aaacaacata cgtgttacct aatacacgta ccttgttgtg agtgtaagtt
      781 tgtggtgcag ttggacattc agagtaccaa agaggacctg cgtgttgtac aacagctgct
      841 tatgggtgcg ttaacagtaa cgtgcccact ctgcgcatca agtaactaac tgcaatggcg
      901 tcacctgaag gtacagatgg ggaggggaag ggatgttgtg gatggtttga agtagaggca
      961 attgtagaaa aaaaaacagg agataaaata tcagatgatg aaagtgacga ggaggatgaa
     1021 atagatacag atttagatgg atttatagac gattcatata tacaaaatat acaggcagac
     1081 gcagaaacag tcaacaattg ttgcaagtac aaacagcaca tgcagataaa cagacgttgc
     1141 aaaaactaaa acgaaagtat atagctagtc cattaaggga tattagtaat cagcaaactg
     1201 tgtgccggga aggagtaaaa cggaggctta ttttatcaga cctacaagac agcgggtatg
     1261 gcaatacatt ggaaactctg gaaacaccag aacaggtaga tgaagaggta cagggacgtg
     1321 ggtgcgggaa tacacaaaat ggaggctcac aaaacagtac ctatagtaac aatagtgagg
     1381 actctgtaat acatatggat attgatagaa acaatgaaac gccaacacaa caattgcagg
     1441 acttgtttaa aagtagcaat ttacaaggta aattatatta taaatttaaa gaagtgtatg
     1501 gtattccatt ttcagaattg gtgcgtacgt ttaaaagtga tagtacatgt tgcaatgatt
     1561 ggatatgtgc tatatttggt gttaatgaaa cattagccga ggcactaaaa actataataa
     1621 aaccacactg tatgtattat catatgcaat gtttaacatg tacatggggg gttatagtaa
     1681 tgatgctaat tagatataca tgtggcaaaa acagaaaaac aattgcaaaa gcattaagct
     1741 caatattaaa tgtaccacag gagcaaatgt taattcaacc accaaaaata cgaagtcctg
     1801 ctgtagcttt atatttttat aaaacagcaa tgtcaaatat tagtgatgtg tatggagaca
     1861 caccagaatg gatacaaaga caaacacaat tgcaacacag tttacaggat agtcaatttg
     1921 aattatctaa aatggtgcag tgggcatttg ataatgaagt aacagatgat agccaaattg
     1981 cgtttcaata tgcacaatta gcagatgtag acagcaatgc acaagccttt ttaaaaagca
     2041 atatgcaggc aaaatatgta aaggattgtg gaataatgtg tagacattat aaaagggcac
     2101 aacagcaaca aatgaatatg tgccagtgga taaagcacat atgtagtaaa acagatgaag
     2161 ggggtgattg gaaacccatt gtacaatttt taagatatca aggggtcgat ttcatttcat
     2221 ttctaagtta ctttaaatta tttctacaag gaacacctaa acataactgt ttggtacttt
     2281 gtggaccgcc aaatacaggt aaatcatgct ttgctatgag tcttataaag ttttttcaag
     2341 ggtctgtcat ttcatttgtg aattcacaaa gccacttttg gttgcagcca ttagacaatg
     2401 ctaaacttgg gttgttggat gatgcaacag aaatatgttg gaaatatata gacgattatt
     2461 taaggaattt ggtagatgga aatcctataa gtttagatag aaaacataaa caattagtac
     2521 aaataaaatg tccaccatta ctaattacaa ccaatataaa tcctatgcta gatgctaaat
     2581 tacgatattt acacagtaga atgttagtgt ttcagtttca aaatccattt ccattagata
     2641 ataatggtaa tcctgtatat gaattaagta atgtaaactg gaaatgtttc tttacaagga
     2701 cgtggtccag attaaatttg gataacgacg aggacaaaga aaacaatgga gacgctttcc
     2761 caacgtttaa atgcgtgcca gaacaaaata ctagactgtt ttgaaaaaag atagtagatg
     2821 tattgcagat catatagaat attggaaagc tgtgcgacat gaaaatgtgc tatactataa
     2881 agcaagagaa aatgacatta ctgtactaaa ccaccagatg gtgccttgtt tacaagtatg
     2941 taaagcaaaa gcatgtagtg caatagaagt gcaaatagca ctggaatcat taagtacaac
     3001 aatatataac aatgaagagt ggacattaag agacacatgc gaggaactat ggcttactga
     3061 acctaaaaaa tgctttaaaa aagaaggaca acatatagaa gtatggtttg atggtagtaa
     3121 aaacaattgt atgcaatatg tagcctggaa atatatatat tacaatggag attgtgggtg
     3181 gcaaaaagtg tgttctgggg tagactatag aggtatatat tatgtacatg atggccacaa
     3241 aacatactac acagactttg aacaagaggc caaaaaattt gggtgtaaaa acatatggga
     3301 agtacatatg gaaaatgaga gtatttattg tcctgactct gtgtctagta cctgtagata
     3361 caacgtatcc cctgttgaaa ctgttaacga atacaacacc cacaagacca ccaccaccac
     3421 ctccacgtcc gtgggcaacc aagacgccgc agtatcccac agaccaggaa aacgacccag
     3481 actacgggaa tcagaatttg actcctccag agagtcccac gcaaagtgtg tcacaacaca
     3541 cacacacatc agcgacacag acaataccga cagtagaagt agaagtatca acaacaacaa
     3601 ccaccctggt gataagacta cgcctgtagt acatttaaaa ggtgaaccta acagattaaa
     3661 atgttgtaga tatcgatttc aaaaatataa aacattgttt gtggatgtaa catcaacata
     3721 tcattggaca agtacagaca ataaaaatta tagcataatt acaattatat ataaggatga
     3781 aacacaacga aacagctttt taagtcatgt aaaaattcca gtagtgtaca ggttagtttg
     3841 ggacaaatga gttttccata aagtgctgta tatattgtat atacatttgt gttattgtaa
     3901 cacacaaata cgtgaagtgt acctgccata cattgctgct acgcatatat attgcaacca
     3961 ttgatttttg tgttattggt gtgtttgcgc tttgcttttg tgtttgtttg cttgtgtgtc
     4021 atgttgtccc gcttttgcta tctgcctctg tgttttccag ttgtatatta ttaataatat
     4081 tgttttggtt tgttatagcc acatcctttt ttaatacatt tataatattt ttgatatttt
     4141 tttactgtcc tgtgctgtgt atatatttac atgctttgtg gataataaat aatatgtaaa
     4201 tgtagtagta ctgttactac tatggttgcc caccgtgcca cacgacgcaa acgcgcatct
     4261 gcaacacaac tatataaaac atgtaagttg tctggtacat gtccagagga tgttgttaat
     4321 aaaatagagc aaaaaacatg ggctgataaa atattgcaat ggggaagttt atttacatat
     4381 tttggaggcc ttggcattgg tacaggaact gggtctgggg gtcgtgcagg ctatgttcca
     4441 ttggggtcta ggccttccac aatagttgat gtaactccgg cgcgaccacc tattgttgtg
     4501 gaatccgtag ggcctacaga cccttccatt gttacattag ttgaggagtc cagtgttata
     4561 gaatctggtg cagggattcc taattttact gggtctgggg gatttgaaat tacatcctca
     4621 tcaacaacta cacctgccgt gttggatatt acaccaacct ctagtactgt acatgtcagt
     4681 agtacccata taaccaatcc gttatttatt gatccccctg ttattgaggc cccacaaaca
     4741 ggcgaggtgt ctggcaatat tttaattagc acacccacat ctggtataca tagctatgaa
     4801 gaaataccta tgcaaacatt tgctgttcac ggttctggta cagaacctat tagtagtact
     4861 cctattccag gctttaggcg tattgcagct cctagattat atagaaaagc atttcagcag
     4921 gttaaggtaa ctgaccctgc atttcttgat agacctgcaa cattagtatc tgctgataat
     4981 ccactttttg aaggtactga cacatcttta gctttttctc cgtcgggtgt ggctcctgac
     5041 cctgatttta tgaatatagt agcattacat aggcctgcat ttactacacg taggggtggt
     5101 gtacgtttta gtaggcttgg cagaaaggct actatacaaa cacgtagagg cacacaaata
     5161 ggtgcccgtg tgcattatta ttatgatata agtcctattg cacaggctga ggaaattgaa
     5221 atgcagccat tattgtctgc aaataattca tttgatggcc tatatgatat ttatgcaaat
     5281 atagatgatg aagcacctgg tttgtctagc cagtcagttg ctacaccttc tgcacactta
     5341 cctataaagc cttccacatt gtcttttgct agtaacacca ctaatgtaac tgccccttta
     5401 ggtaatgtgt gggaaacacc attttattca ggtcctgaca tagtgttgcc tacaggcccc
     5461 agtacgtggc cctttgttcc tcagtctcct tatgatgtta cccatgatgt atatatacag
     5521 ggatcctcct ttgcattatg gcctgtgtat ttttttagac gtaggcgccg taaacgtatt
     5581 ccctattttt ttgcagatgg cgacgtggcg gcctagtgaa aataaggtgt atctacctcc
     5641 aacacctgtt tcaaaggttg tggcaacgga ttcctatgta aaacgcacta gtatatttta
     5701 tcatgcaggc agttcacgat tgcttgccgt aggacatccc tattactctg tgactaagga
     5761 caataccaaa acaaacattc ccaaagttag tgcatatcaa tatagggtat ttagggtacg
     5821 gttgcccgac cctaataagt ttgggcttcc agatactaat atttataatc cggaccagga
     5881 acggttagtg tgggcatgtg taggtttgga ggtaggccgc ggacagcctt taggtgctgg
     5941 gctaagtggc catccattgt ttaataggct ggatgatact gaaagttcca atttagcaaa
     6001 taataatgtt atagaagata gtagggacaa tatatcagtt gatggcaagc aaacacagtt
     6061 gtgtattgtt ggatgtactc ccgctatggg tgaacattgg actaaaggtg ctgtgtgtaa
     6121 gtccacacaa gttaccacag gggactgccc gcctcttgca ttaattaata cacctataga
     6181 ggatggggac atgatagaca caggatttgg cgctatggac tttaaggtgt tgcaggaatc
     6241 taaggctgag gtacctttag acattgtaca atccacctgt aaatatcctg actatttaaa
     6301 aatgtctgca gatgcctatg gtgattctat gtggttttac ttacgcaggg aacaattatt
     6361 tgccagacat tattttaata gggctggtaa agttggggaa acaatacctg cagagttata
     6421 tttaaagggt agcaatggta gagaaccccc tccgagttct gtatatgttg ctacgcctag
     6481 tgggtctatg attacgtctg aggcacagtt atttaataaa ccttattggt tgcaacgtgc
     6541 ccaaggccat aataatggca tttgctgggg taatcaatta tttgttactg tagtagatac
     6601 tactagaagt actaacatga ctattagtac tgctacagaa cagttaagta aatatgatgc
     6661 acgaaaaatt aatcagtacc ttagacatgt ggaggaatat gaattacaat ttgtttttca
     6721 attatgcaaa attactttgt ctgcagaggt tatggcatat ttacataata tgaatgctaa
     6781 cctactggag gactggaata ttgggttatc cccgccagtg gccaccagcc tagaagataa
     6841 atatagatat gttagaagca cagctataac atgtcaacgg gaacagccac caacagaaaa
     6901 acaggaccca ttagctaaat ataaattttg ggatgttaac ttacaggaca gtttttctac
     6961 agacctggat caatttccac tgggtagaaa atttttaatg caactgggca ctaggtcaaa
     7021 gcctgctgta gctacctcta aaaagcgatc tgctcctacc tccacctcta caccagcaaa
     7081 acgtaaaagg cggtagtgtg ttgttgtgtg tttgtgtaac tgtgtttgtg tgttgtatat
     7141 atggtatgtt tgtgtatgtg ctttatttta tactttgtat gtgtatgttg tgtttgtgta
     7201 aatgtttgtg tgaaatgttt gtgtgtgtat tcattgtatg tatgactgta tatatgtgta
     7261 atgtttgtgt gtctgtaata aacatgaatg agtgctttta cgcgtggttg cataaactaa
     7321 ggtgtgtcat tattgtggct tttgttttgt aagttattgt gtacagtgta ctatgtgtat
     7381 tgtgcataca tatatatacc ataacatact ccattttgtt gtttttccgc cattttgtac
     7441 atgcaaccga attcggttgc atggcctagt gccattattt aaactaaaag gaattcggtt
     7501 gcatggccta gtgccattat ttaaaccaaa aggccctttt cagcagaaca gttaatcctt
     7561 tggcatattg ccgtttcctg tgttttatac ttgaattatg tacagtaccg caccctgtat
     7621 tactcacagg tactatgact gccaactatg cttttatctg catactttag tgctgttggg
     7681 cacacatttt tatacatgtg tctgcaactt tggtgttttg gcttgcagaa tacactatgt
     7741 aggccaagta tctgtcagta tctgttttgc aaacatgtaa catacaatta ctcatttttt
     7801 aaaaccgttt acggtcgtgc aaaaacaggt ttcttttaat tgtt
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