Human papillomavirus type 58 complete genome
GenBank: D90400.1
FASTA Graphics
LOCUS       PPH58                   7824 bp    DNA     circular VRL 24-JUL-2016
DEFINITION  Human papillomavirus type 58 complete genome.
ACCESSION   D90400
VERSION     D90400.1
KEYWORDS    .
SOURCE      human papillomavirus 58
  ORGANISM  human papillomavirus 58
            Viruses; Monodnaviria; Shotokuvirae; Cossaviricota;
            Papovaviricetes; Zurhausenvirales; Papillomaviridae;
            Firstpapillomavirinae; Alphapapillomavirus.
REFERENCE   1  (bases 1 to 7824)
  AUTHORS   Kirii,Y., Iwamoto,S. and Matsukura,T.
  TITLE     Human papillomavirus type 58 DNA sequence
  JOURNAL   Virology 185 (1), 424-427 (1991)
   PUBMED   1656594
COMMENT     Data kindly submitted in computer readable form by: Yasuyuki Kirii
            Kanebo Institute for Cancer Research
            1-5-90 Tomobuchi-cho
            Miyakojima-ku, Osaka 534
            Japan.
FEATURES             Location/Qualifiers
     source          1..7824
                     /organism="human papillomavirus 58"
                     /mol_type="genomic DNA"
                     /isolate="patient specimen GN479"
                     /db_xref="taxon:10598"
                     /note="HPV58"
     regulatory      72..77
                     /regulatory_class="TATA_box"
     CDS             110..559
                     /note="unnamed protein product; open reading frame E6"
                     /codon_start=1
                     /protein_id="BAA31845.1"
                     /translation="MFQDAEEKPRTLHDLCQALETSVHEIELKCVECKKTLQRSEVYD
                     FVFADLRIVYRDGNPFAVCKVCLRLLSKISEYRHYNYSLYGDTLEQTLKKCLNEILIR
                     CIICQRPLCPQEKKRHVDLNKRFHNISGRWTGRCAVCWRPRRRQTQV"
     CDS             574..870
                     /note="unnamed protein product; open reading frame E7"
                     /codon_start=1
                     /protein_id="BAA31846.1"
                     /translation="MRGNNPTLREYILDLHPEPTDLFCYEQLCDSSDEDEIGLDGPDG
                     QAQPATANYYIVTCCYTCGTTVRLCINSTTTDVRTLQQLLMGTCTIVCPSCAQQ"
     CDS             883..2817
                     /note="unnamed protein product; open reading frame E1"
                     /codon_start=1
                     /protein_id="BAA31847.1"
                     /translation="MDDPEGTNGVGAGCTGWFEVEAVIERRTGDNISDDEDETADDSG
                     TDLIEFIDDSVQSTTQAEAEAARALFNVQEGVDDINAVCALKRKFAACSESAVEDCVD
                     RAANVCVSWKYKNKECTHRKRKIIELEDSGYGNTEVETEQMAHQVESQNGDADLNDSE
                     SSGVGASSDVSSETDVDSCNTVPLQNISNILHNSNTKATLLYKFKEAYGVSFMELVRP
                     FKSDKTSCTDWCITGYGISPSVAESLKVLIKQHSIYTHLQCLTCDRGIILLLLIRFKC
                     SKNRLTVAKLMSNLLSIPETCMIIEPPKLRSQACALYWFRTAMSNISDVQGTTPEWID
                     RLTVLQHSFNDDIFDLSEMIQWAYDNDITDDSDIAYKYAQLADVNSNAAAFLRSNAQA
                     KIVKDCGVMCRHYKRAEKRGMTMGQWIQSRCEKTNDGGNWRPIVQFLRYQNIEFTAFL
                     VAFKQFLQGVPKKSCMLLCGPANTGKSYFGMSLIHFLKGCIISYVNSKSHFWLQPLSD
                     AKLGMIDDVTAISWTYIDDYMRNALDGNDISIDVKHRALVQLKCPPLIITSNTNAGKD
                     SRWPYLHSRLTVFEFNNPFPFDANGNPVYKINDENWKSFFSRTWCKLGLIEEEDKEND
                     GGNISTFKCSAGQNPRHIRS"
     CDS             2753..3829
                     /note="unnamed protein product; open reading frame E2"
                     /codon_start=1
                     /protein_id="BAA31848.1"
                     /translation="MEEISARLSAVQDKILDIYEADKNDLTSQIEHWKLIRMECAIMY
                     TARQMGISHLCHQVVPSLVASKTKAFQVIELQMALETLNASPYKTDEWTLQQTSLEVW
                     LSEPQKCFKKKGITVTVQYDNDKANTMDYTNWSEIYIIEETTCTLVAGEVDYVGLYYI
                     HGNEKTYFKYFKEDAKKYSKTQLWEVHVGSRVIVCPTSIPSDQISTTETADPKTTEAT
                     NNESTQGTKRRRLDLPDSRDNTQYSTKYTDCAVDSRPRGGGLHSTTNCTYKGRNVCSS
                     KVSPIVHLKGDPNSLKCLRYRLKPFKDLYCNMSSTWHWTSDDKGDKVGIVTVTYTTET
                     QRQLFLNTVKIPPTVQISTGVMSL"
     CDS             <3330..3605
                     /note="unnamed protein product; no ATG start codon;
                     open reading frame E4"
                     /codon_start=1
                     /protein_id="BAA14396.1"
                     /translation="LYVLHLYLVIKYPLLKLLTQRPPRPPTTKVHRGQSDDDSIYQTP
                     ETTPSTPQSIQTAPWTVDHEEEDYTVQLTVHTKGGTCVVLKFHLSCI"
     CDS             3892..4122
                     /note="unnamed protein product; open reading frame E5"
                     /codon_start=1
                     /protein_id="BAA31849.1"
                     /translation="MILPIFVVCFILFLCLCIFLRPLVLSISIYAWLLVLVLLLWVSV
                     GSALRIFFCYLIFLYIPMMCINFHAQYLTQQD"
     CDS             4244..5662
                     /note="unnamed protein product; open reading frame L2"
                     /codon_start=1
                     /protein_id="BAA31850.1"
                     /translation="MRHKRSTRRKRASATQLYQTCKASGTCPPDVIPKVEGTTIADQI
                     LRYGSLGVFFGGLGIGTGSGTGGRTGYVPLGSTPPSEAIPLQPIRPPVTVDTVGPLDS
                     SIVSLIEESSFIDAGAPAPSIPTPSGFDITTSADTTPAILNVSSIGESSIQTVSTHLN
                     PSFTEPSVLRPPAPAEASGHLIFSSPTVSTHSYENIPMDTFVISTDSGNVTSSTPIPG
                     SRPVARLGLYSRNTQQVKVVDPAFLTSPHRLVTYDNPAFEGFNPEDTLQFQHSDISPA
                     PDPDFLDIVALHRPALTSRRGTVRYSRVGQKATLRTRSGKQIGAKVHYYQDLSPIQPV
                     QEQVQQQQQFELQSLNTSVSPYSINDGLYDIYADDADTIHDFQSPLHSHTSFATTRTS
                     NVSIPLNTGFDTPLVSLEPGPDIASSVTSMSSPFIPISPLTPFNTIIVDGADFMLHPS
                     YFILRRRRKRFPYFFADVRVAA"
     CDS             5565..7139
                     /note="unnamed protein product; open reading frame L1"
                     /codon_start=1
                     /protein_id="BAA31851.1"
                     /translation="MVLILCCTLAILFCVADVNVFHIFLQMSVWRPSEATVYLPPVPV
                     SKVVSTDEYVSRTSIYYYAGSSRLLAVGNPYFSIKSPNNNKKVLVPKVSGLQYRVFRV
                     RLPDPNKFGFPDTSFYNPDTQRLVWACVGLEIGRGQPLGVGVSGHPYLNKFDDTETSN
                     RYPAQPGSDNRECLSMDYKQTQLCLIGCKPPTGEHWGKGVACNNNAAATDCPPLELFN
                     SIIEDGDMVDTGFGCMDFGTLQANKSDVPIDICNSTCKYPDYLKMASEPYGDSLFFFL
                     RREQMFVRHFFNRAGKLGEAVPDDLYIKGSGNTAVIQSSAFFPTPSGSIVTSESQLFN
                     KPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMTLCTEVTKEGTYKNDNFKEYVRHV
                     EEYDLQFVFQLCKITLTAEIMTYIHTMDSNILEDWQFGLTPPPSASLQDTYRFVTSQA
                     ITCQKTAPPKEKEDPLNKYTFWEVNLKEKFSADLDQFPLGRKFLLQSGLKAKPRLKRS
                     APTTRAPSTKRKKVKK"
ORIGIN      
        1 ctaaactata atgccaaatc ttgtaaaaac tagggtgtaa ccgaaaacgg tctgaccgaa
       61 accggtgcat atataaagca gacatttttt ggtaggctac tgcaggacta tgttccagga
      121 cgcagaggag aaaccacgga cattgcatga tttgtgtcag gcgttggaga catctgtgca
      181 tgaaatcgaa ttgaaatgcg ttgaatgcaa aaagactttg cagcgatctg aggtatatga
      241 ctttgtattt gcagatttaa gaatagtgta tagagatgga aatccatttg cagtatgtaa
      301 agtgtgctta cgattgctat ctaaaataag tgagtataga cattataatt attcgctata
      361 tggagacaca ttagaacaaa cactaaaaaa gtgtttaaat gaaatattaa ttagatgtat
      421 tatttgtcaa agaccattgt gtccacaaga aaaaaaaagg catgtggatt taaacaaaag
      481 gtttcataat atttcgggtc gttggacagg gcgctgtgca gtgtgttgga gaccccgacg
      541 tagacaaaca caagtgtaac ctgtaacaac gccatgagag gaaacaaccc aacgctaaga
      601 gaatatattt tagatttaca tcctgaacca actgacctat tctgctatga gcaattatgt
      661 gacagctcag acgaggatga aataggcttg gacgggccag atggacaagc acaaccggcc
      721 acagctaatt actacattgt aacttgttgt tacacttgtg gcaccacggt tcgtttgtgt
      781 atcaacagta caacaaccga cgtacgaacc ctacagcagc tgcttatggg cacatgtacc
      841 attgtgtgcc ctagctgtgc acagcaataa acaccatctg caatggatga ccctgaaggt
      901 acaaacgggg taggggcggg ctgtactggc tggtttgagg tagaagcggt aatagaacga
      961 agaacaggag ataatatttc agatgatgag gacgaaacag cagacgatag tggtacagat
     1021 ttaatagagt ttatagatga ttcagtacaa agtactacac aggcagaagc agaggcagcc
     1081 cgagcgttgt ttaatgtaca ggaaggggtg gacgatataa atgctgtgtg tgcactaaaa
     1141 cgaaagtttg cagcatgctc agaaagtgct gtagaggact gtgtggaccg ggctgcaaat
     1201 gtgtgtgtat cgtggaaata taaaaataaa gaatgcacac acagaaaacg aaaaattatt
     1261 gagctagaag acagcggata tggcaatact gaagtggaaa ctgagcagat ggcacaccag
     1321 gtagaaagcc aaaatggcga cgcagactta aatgactcgg agtctagtgg ggtgggggct
     1381 agttcagatg taagcagtga aacggatgta gacagttgta atactgttcc attacaaaat
     1441 attagtaata ttctacataa cagtaatact aaagcaacgc tattatataa attcaaagaa
     1501 gcttatggag taagttttat ggaattagtt agaccattta aaagtgataa aacaagctgt
     1561 acagattggt gtataacagg gtatggaata agtccctccg tagcagaaag tttaaaagta
     1621 ctaattaaac agcacagtat atatacacac ctacaatgtt taacgtgtga cagaggaatt
     1681 atattattat tgttaattag atttaaatgt agcaaaaata gattaactgt ggcaaaatta
     1741 atgagtaatt tactatcaat tcctgaaaca tgtatgatta tcgagccacc aaaattacga
     1801 agtcaagcat gtgccttata ttggtttaga acagcaatgt caaatataag tgatgtgcaa
     1861 gggacaacac cagaatggat agatagatta acagtgttac agcatagctt taatgatgat
     1921 atatttgatt taagtgaaat gatacaatgg gcatatgata atgacattac agatgatagt
     1981 gacattgcat ataaatatgc acagttagca gatgttaata gtaatgcagc agcattttta
     2041 agaagcaatg cacaagcaaa aatagtaaaa gactgtggcg ttatgtgcag acattataaa
     2101 agagcagaaa agcgtggtat gacaatggga caatggatac aaagtaggtg tgaaaaaaca
     2161 aatgatggag gtaattggag accaatagta caatttttaa gatatcaaaa tattgaattt
     2221 acagcatttt tagttgcatt taaacagttt ttacaaggtg taccaaaaaa aagttgtatg
     2281 ttactgtgtg gcccagcaaa tacagggaaa tcatattttg gaatgagttt aatacatttt
     2341 ttaaaaggat gcattatttc atatgtaaat tccaaaagtc atttttggtt gcagccatta
     2401 tcagatgcta aactaggtat gatagatgat gtaacagcca taagctggac atatatagat
     2461 gattatatga gaaatgcatt agatggtaac gacatttcaa tagatgtaaa acatagggca
     2521 ttagtacaat taaaatgtcc accattaata attacctcaa atacaaatgc aggcaaagat
     2581 tcacgatggc catatttgca cagtagacta acagtatttg aatttaacaa tccatttcca
     2641 tttgatgcaa atggtaatcc agtgtataaa ataaatgatg aaaattggaa atcctttttc
     2701 tcaaggacgt ggtgcaaatt aggcttaata gaggaagagg acaaggaaaa cgatggagga
     2761 aatatcagca cgtttaagtg cagtgcagga caaaatccta gacatatacg aagctgataa
     2821 aaatgattta acatcacaaa ttgaacattg gaaactaata cgcatggagt gtgctataat
     2881 gtatacagcc agacaaatgg gaatatcaca tttgtgccac caggtggtgc cgtcattggt
     2941 agcatcaaag actaaagcgt ttcaagtaat tgaactgcaa atggcattag agacattaaa
     3001 tgcatcacca tataaaacag atgaatggac attgcaacaa acaagcttag aagtgtggtt
     3061 atcagagcca caaaaatgct ttaaaaaaaa aggcataaca gtaactgtac aatatgacaa
     3121 tgataaagca aacacaatgg attatacaaa ttggagtgaa atatatatta ttgaggaaac
     3181 aacatgtact ttggtagcag gagaagttga ctatgtgggg ttgtattata tacatggcaa
     3241 tgaaaagacg tattttaaat attttaaaga ggatgcaaaa aagtactcta aaacacaatt
     3301 atgggaggta catgtgggta gtcgggtaat tgtatgtcct acatctatac ctagtgatca
     3361 aatatccact actgaaactg ctgacccaaa gaccaccgag gccaccaaca acgaaagtac
     3421 acaggggaca aagcgacgac gactcgattt accagactcc agagacaaca cccagtactc
     3481 cacaaagtat acagactgcg ccgtggacag tagaccacga ggaggaggac tacacagtac
     3541 aactaactgt acatacaaag ggcggaacgt gtgtagttct aaagtttcac ctatcgtgca
     3601 tttaaaaggt gacccaaata gtttaaaatg tttaagatat agattaaaac catttaaaga
     3661 cttatactgt aatatgtcat ccacatggca ttggaccagt gatgacaaag gtgacaaagt
     3721 aggaattgtt actgtaacat acacaacgga aacacaacga caactgtttt taaacactgt
     3781 taaaatacca cccactgtgc aaataagtac tggtgttatg tcattgtaat tgtattgtac
     3841 aattactgta tgtaaaccac aagccaatat gtgctgctaa gtgtatatac aatgatatta
     3901 cctatttttg ttgtttgttt tatactgttt ttatgcttgt gcattttttt gcggccattg
     3961 gtgctatcta tttctatata tgcttggttg ctggtgttgg tgttgctgct ttgggtgtct
     4021 gtggggtcgg ctctacgaat ttttttctgt tacttaatat ttttatatat accaatgatg
     4081 tgtattaatt ttcatgcaca atacttaacc caacaagact aactgtatac tggttctgca
     4141 catggtggta tggtattgta aatatttact gttgtgtgtg ttgtttttat tatttttata
     4201 catttactaa taaatacttt tatattttta gcactgtctt attatgagac acaaacggtc
     4261 tacaaggcgc aagcgtgcat ctgctacaca actttaccaa acatgcaagg cctcaggcac
     4321 ctgcccacct gatgttatac ccaaagttga aggcactact atagcagatc aaatattacg
     4381 atatggtagc ttaggggtgt tttttggagg tttaggcatt ggtacagggt cgggtacagg
     4441 tggcaggact ggatatgtgc cccttggtag taccccaccg tctgaggcta tacctttaca
     4501 gcccatacgt cccccagtta ccgttgatac tgtggggcct ttggattctt ctattgtatc
     4561 tttaatagag gaatctagtt ttatagacgc cggtgcacca gccccatcaa ttcccactcc
     4621 atctggtttt gatattacca cctctgcaga tactacacct gcaatactta atgtttcctc
     4681 tattggagaa tcatctatac aaactgtttc tacacattta aatccctcct ttactgagcc
     4741 atccgtactc cgccctcctg cacctgcaga ggcctctgga catttaatat tttcctctcc
     4801 tactgttagc acacatagtt atgaaaacat accaatggat acctttgtta tttctactga
     4861 cagtggcaat gtcacgtcta gcacacccat tccagggtct cgccctgtgg cacgccttgg
     4921 tttatacagt cgcaacaccc aacaagttaa ggttgttgac cctgcttttt taacatctcc
     4981 tcatagactt gtaacatatg ataatccagc atttgaaggc tttaaccctg aggacacatt
     5041 gcagtttcaa catagtgaca tatcgcctgc tcctgatcct gattttctag atattgttgc
     5101 attacacaga cctgcattaa cctctcgcag gggtactgta cgttatagta gggttgggca
     5161 aaaggctaca cttcgtactc gcagtggaaa gcaaataggg gctaaagtac attactacca
     5221 agacttaagt cccatacagc ctgtccagga acaggtacaa cagcagcaac aatttgaatt
     5281 acaatcttta aatacttctg tttctcccta tagtattaat gatggacttt atgatattta
     5341 tgctgacgat gctgatacta tacatgattt tcagagtcct ctgcactcac atacgtcctt
     5401 tgccaccaca cgtaccagta atgtgtccat accattaaat actggatttg acactcctct
     5461 tgtgtcattg gaacctggtc cagacattgc atcttctgta acatctatgt ctagtccatt
     5521 tattcctata tctccactaa ctccttttaa taccataatt gtggatggtg ctgattttat
     5581 gttgcaccct agctatttta ttttgcgtcg cagacgtaaa cgttttccat atttttttgc
     5641 agatgtccgt gtggcggcct agtgaggcca ctgtgtacct gcctcctgtg cctgtgtcta
     5701 aggttgtaag cactgatgaa tatgtgtcac gcacaagcat ttattattat gctggcagtt
     5761 ccagactttt ggctgttggc aatccatatt tttccatcaa aagtcccaat aacaataaaa
     5821 aagtattagt tcccaaggta tcaggcttac agtatagggt ctttagggtg cgtttacctg
     5881 atcccaataa atttggtttt cctgatacat ctttttataa ccctgataca caacgtttgg
     5941 tctgggcatg tgtaggcctt gaaataggta ggggacagcc attgggtgtt ggcgtaagtg
     6001 gtcatcctta tttaaataaa tttgatgaca ctgaaaccag taacagatat cccgcacagc
     6061 cagggtctga taacagggaa tgcttatcta tggattataa acaaacacaa ttatgtttaa
     6121 ttggctgtaa acctcccact ggtgagcatt ggggtaaagg tgttgcctgt aacaataatg
     6181 cagctgctac tgattgtcct ccattggaac tttttaattc tattattgag gatggtgaca
     6241 tggtagatac agggtttgga tgcatggact ttggtacatt gcaggctaat aaaagtgatg
     6301 tgcctattga tatttgtaac agtacatgca aatatccaga ttatttaaaa atggccagtg
     6361 aaccttatgg ggatagtttg ttcttttttc ttagacgtga gcagatgttt gttagacact
     6421 tttttaatag ggctggaaaa cttggcgagg ctgtcccgga tgacctttat attaaagggt
     6481 ccggtaatac tgcagttatc caaagtagtg cattttttcc aactcctagt ggctctatag
     6541 ttacctcaga atcacaatta tttaataagc cttattggct acagcgtgca caaggtcata
     6601 acaatggcat ttgctggggc aatcagttat ttgttaccgt ggttgatacc actcgtagca
     6661 ctaatatgac attatgcact gaagtaacta aggaaggtac atataaaaat gataatttta
     6721 aggaatatgt acgtcatgtt gaagaatatg acttacagtt tgtttttcag ctttgcaaaa
     6781 ttacactaac tgcagagata atgacatata tacatactat ggattccaat attttggagg
     6841 actggcaatt tggtttaaca cctcctccgt ctgccagttt acaggacaca tatagatttg
     6901 ttacctccca ggctattact tgccaaaaaa cagcaccccc taaagaaaag gaagatccat
     6961 taaataaata tactttttgg gaggttaact taaaggaaaa gttttctgca gatctagatc
     7021 agtttccttt gggacgaaag tttttattac aatcaggcct taaagcaaag cccagactaa
     7081 aacgttcggc ccctactacc cgtgcaccat ccaccaaacg caaaaaggtt aaaaaataat
     7141 tgttgtggta cttacactat tttattatac atgtttgttt gttttatgta tgtgttgtct
     7201 gtttgtttat gtttgtgtat atgttgtatg tgttatgtgt catgtttgtg tacatgttct
     7261 atgtccttgt cagtttcctg tttctgtata tatgtaataa actattgtgt gtattgtaaa
     7321 ctatttgtat tgtttgggtg tatctatgag taaggtgctg tccctaaatt gccctaccct
     7381 gccctgccta ttatgcatac ctatgtaata gtatttgtat gatatgtatt ttatagtttt
     7441 taacagtact gcctccattt tactttacct ccattttgtg catgtaaccg atttcggttg
     7501 ctggcacaaa cgtgtttttt ttaaactaca atttaaacaa tacagttaat cctttccctt
     7561 cctgcactgc ttttgcctat acttgcatat gtgactcata tatacatgca gtgcagttgc
     7621 aaaatgttta attatactca tagtttaaac atgcttatag gcacatattt taacttactt
     7681 tcaatgctta agtgcagttt tggcttgcac aatagtttgt tatgccaaac tatgtcttgt
     7741 aaaagtgact cactaacatt tattgccagg tgtggactaa ccgttttggg tcacattgtt
     7801 catgtttcaa cattttatat aata
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