Infectious pancreatic necrosis virus isolate H13Y14no1Sea37Y14 polyprotein gene, partial cds
GenBank: MH562041.1
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LOCUS       MH562041                2715 bp    RNA     linear   VRL 22-AUG-2018
DEFINITION  Infectious pancreatic necrosis virus isolate H13Y14no1Sea37Y14
            polyprotein gene, partial cds.
ACCESSION   MH562041
VERSION     MH562041.1
KEYWORDS    .
SOURCE      Infectious pancreatic necrosis virus
  ORGANISM  Infectious pancreatic necrosis virus
            Viruses; Riboviria; Orthornavirae; Birnaviridae; Aquabirnavirus.
REFERENCE   1  (bases 1 to 2715)
  AUTHORS   Kristoffersen,A.B., Devold,M., Aspehaug,V., Gjelstenli,O., Breck,O.
            and Bang Jensen,B.
  TITLE     Molecular tracing confirms that infection with infectious
            pancreatic necrosis virus follows the smolt from hatchery to
            grow-out farm
  JOURNAL   J. Fish Dis. (2018) In press
   PUBMED   30039862
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 2715)
  AUTHORS   Kristoffersen,A.B., Devold,M., Aspehaug,V., Gjelstenli,O., Breck,O.
            and Jensen,B.B.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-JUL-2018) PatoGen AS, R&D, Rasmus Ronnebergs gate 21,
            Alesund, Norge 6002, Norway
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..2715
                     /organism="Infectious pancreatic necrosis virus"
                     /mol_type="genomic RNA"
                     /isolate="H13Y14no1Sea37Y14"
                     /isolation_source="kidney"
                     /db_xref="taxon:11002"
                     /segment="A"
                     /country="Norway"
                     /collection_date="2004/2015"
     CDS             <1..>2715
                     /note="encodes VP2, VP3 and VP4"
                     /codon_start=1
                     /product="polyprotein"
                     /protein_id="AXN75726.1"
                     /translation="TGPASIPDDITERHILKQETSSYNLEVSESGSGILVCFPGAPGS
                     RIGAHYRWNANQTGLEFDQWLETSQDLKKAFNYGRLISRKYDIQSSTLPAGLYALNGT
                     LNAATFEGSLSEVESLTYNSLMSLTTNPQDKVNNQLVTKGVTVLNLPTGFDKPYVRLE
                     DETPQGLQSMNGAKMRCTAAIAPRRYEIDLPSQRLPPVPATGTLTTLYEGNADIVNST
                     TVTGDINFGLARQPADETTFHFQLDFMGLDNDVPVVTVVSSALATTDNHRGVSAKMTQ
                     SIPTENITKPITRVKLSYKINQQTAIDNVATLGTMGPASVSFSSGNGNVPGVLRPITL
                     VAYEKMTPLSILTVAGVSNYELIPNPELLKNMVTRYGKYDPEGLNYAKMILSHREELD
                     IRTVWRTEEYKERTRVFNEITDFSSDLPTSKAWGWRDIVRGIRKVAAPVLSTLFPMAA
                     PLIGMADQFIGDLTKTNAAGGRYHSMAAGGRYKDVLESWASGGPDGKFSRALKNRLES
                     ANYEEVELPPPSKGVIVPVVHTVKSAPGEAFGSLAIIIPGEYPELLDANQQVLSHFAN
                     GTGSVWGIGEDIPFEGDNMCYTALPLKEIKRNGNIVVEKIFAGPIMGPSAQLGLSLLV
                     NDIEDGVPRMVFTGEIADDEETIIPICGVDIKAIAAHEQGLPLIGNQPGVDEEVRNTS
                     LAAHLIQTGTLPVQRAKGSNKRIKYLGELMASNASGMDEELQRLLNATMARAKEVKDA
                     EIYKLLKLMAWTRKNDLTDHMYEWSKEDPDALKFGKLISTPPKHPEKPKGPDQHHAQE
                     ARATRISLDAVRAGADFATPEWVALNNYRGPSPGQFKYYLITGREPEPGDEYEDYIKQ
                     PIVKPTDMNKIRRLANSVYGLPHQEPAPEEFYDAVAAVFAQNGGRGPDQ"
ORIGIN      
        1 actggaccag caagcatccc ggacgacata acggagagac acatcctaaa acaagagacc
       61 tcgtcataca acctagaggt ctccgaatca ggaagtggca ttcttgtttg tttccctggg
      121 gcaccaggct cacggatcgg tgcacactac agatggaatg cgaaccagac ggggctggag
      181 ttcgaccagt ggctggagac gtcgcaggac ctgaagaaag ccttcaacta tgggaggctg
      241 atctcaagga aatacgacat ccaaagctcc acgctaccgg ccggtctcta tgctctgaac
      301 gggacgctca acgctgccac ctttgaaggc agtctgtctg aggtggagag cctgacctac
      361 aacagtctga tgtctctaac cacgaacccc caggacaaag tcaacaacca actggtgacc
      421 aaaggagtca ccgtcctgaa tctaccaaca gggttcgaca aaccatacgt ccgcctagag
      481 gacgagacac cccagggtct ccagtcaatg aacggggcca agatgaggtg cacagctgca
      541 attgcaccgc ggaggtacga gatcgacctc ccatcccaac gcctaccccc cgttcctgcg
      601 acaggaaccc tcaccactct ctacgaggga aacgccgaca tcgtcaactc cacaacagtg
      661 acgggagata taaacttcgg tctggcaaga caacccgcag acgagaccac gttccacttc
      721 cagctggact tcatgggcct tgacaatgac gtcccagtgg tcacagtggt cagctccgcg
      781 ctggccacaa ccgacaacca cagaggagtc tcagccaaga tgacccagtc catcccgacc
      841 gagaacatca ccaagccgat caccagggtc aagctgtcat acaagatcaa ccagcagaca
      901 gcaatcgaca acgtcgccac cctgggcaca atgggtccag cttccgtatc cttctcatcg
      961 gggaacggaa atgtcccagg cgtgctcaga ccaatcacac tggtggccta tgagaagatg
     1021 acaccgctgt ccatcctgac cgtagctgga gtgtccaact acgagctgat cccgaaccca
     1081 gaactcctca agaacatggt gacacgctat ggcaagtacg accccgaagg tctcaactat
     1141 gccaagatga tcctgtccca cagggaggag ctggacatca ggacagtgtg gaggacagag
     1201 gagtacaagg agaggaccag agtcttcaac gaaatcacgg acttctccag tgacctgccc
     1261 acgtcaaagg catggggctg gagagacata gtcagaggaa ttcggaaagt cgcagctcct
     1321 gtactgtcaa cgctgtttcc aatggcagca ccactcatag gaatggcaga ccaattcatt
     1381 ggagatctca ccaagaccaa cgcagcaggc ggaaggtacc actccatggc cgcaggaggg
     1441 cgctacaaag acgtgctcga gtcctgggca agcggagggc ccgacggaaa attctcccga
     1501 gccctcaaga acaggctgga gtccgccaac tacgaggaag tcgagcttcc acccccctca
     1561 aaaggagtca ttgtccctgt ggtgcacaca gtcaagagtg caccaggcga ggcattcggg
     1621 tccctggcaa ttataattcc aggggagtac cccgagcttc tagatgccaa ccagcaggtc
     1681 ctatcccact tcgcaaacgg caccgggagc gtgtggggca taggagagga catacccttc
     1741 gagggagaca acatgtgcta cactgcactc ccactcaagg aaatcaagag aaacgggaac
     1801 atagtagtcg agaagatctt tgctgggcca attatgggtc cctccgctca actaggactg
     1861 tccctacttg tgaacgacat cgaggacgga gttccaagga tggtattcac cggcgaaatc
     1921 gccgatgacg aggagacaat tataccaatc tgcggtgtag acatcaaagc catcgcagcc
     1981 cacgaacaag ggctgccact catcggcaac caaccaggag tggacgagga ggtgcgaaac
     2041 acatccctgg ccgcacacct gatccagacc gggaccctgc ccgtacaacg tgcaaagggc
     2101 tccaacaaga ggatcaagta cctgggagag ctgatggcat caaatgcatc cgggatggac
     2161 gaggaactgc aacgcctcct gaacgccaca atggcacggg ccaaagaagt caaggacgcc
     2221 gagatctaca aacttcttaa gctcatggca tggaccagaa agaacgacct cactgaccac
     2281 atgtacgagt ggtcaaaaga ggaccccgat gcactcaagt tcggaaagct catcagcacg
     2341 ccaccaaagc accctgagaa gcccaaagga ccagaccaac accacgccca agaggcgaga
     2401 gccacccgca tatcactgga cgccgtgaga gccggggcgg acttcgccac accggagtgg
     2461 gtcgcgctga acaactaccg cggcccatct cccgggcagt tcaagtacta cctgatcact
     2521 ggacgagaac cagaaccagg cgacgagtac gaggactaca taaaacaacc catcgtgaaa
     2581 ccgaccgaca tgaacaaaat cagacgtcta gccaacagtg tgtacggcct cccacaccag
     2641 gaaccagcac cagaggagtt ctatgatgca gttgcagctg tattcgcaca gaacggaggc
     2701 agaggtcccg accag
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