Treponema pallidum PolA gene, partial cds
GenBank: U57757.1
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LOCUS       TPU57757                3885 bp    DNA     linear   BCT 25-OCT-1996
DEFINITION  Treponema pallidum PolA gene, partial cds.
ACCESSION   U57757
VERSION     U57757.1
KEYWORDS    .
SOURCE      Treponema pallidum
  ORGANISM  Treponema pallidum
            Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.
REFERENCE   1  (bases 1 to 3885)
  AUTHORS   Steiner,B.M., Rodes,B. and Johnson,S.
  TITLE     Sequencing and Characterization of the PolA gene from Treponema
            pallidum
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3885)
  AUTHORS   Steiner,B.B.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-MAY-1996) Bret BMS Steiner, DASTLR, Centers for
            Disease Control and Prevention, 1600 Clifton Road, Atlanta, GA
            30333, USACOMMENT     On Oct 25, 1996 this sequence version replaced gi:1373383.FEATURES             Location/Qualifiers     source          1..3885
                     /organism="Treponema pallidum"
                     /mol_type="genomic DNA"
                     /strain="Nichols"
                     /db_xref="taxon:160"
                     /clone="Tp 615"     gene            605..3598
                     /gene="PolA"     CDS             605..3598
                     /gene="PolA"
                     /note="similar to proofreading 3'-5' exonuclease and
                     polymerase"
                     /codon_start=1
                     /transl_table=11
                     /protein_id="AAB17467.1"
                     /translation="MQEKKTLYLLDAYGLIYRSYHAFARAPLINDSGANVSAVYGFFR
                     SLHTLLCHYRPRYFVAVFDSLTPTFRHVQYPAYKAKRDKTSAELYAQIPLIEEILCAL
                     GITVLRHDGFEADDLIATLAKRVAAEHCHVVIISSDKDVLQLVCDTVQVLRLDIDHKW
                     TCCDAAYVQQRWTVMPTQLLDLFSLMGDSSDNVPGVRGIGPKTAAHLLHCFGTLDGIY
                     RHTYSLKEALRTKIVCGKKDAFFSRSLIELRDDVPCVFSLEDSCCIPLDVTSAARIFV
                     REGLHALAQQYRACVQEIDTEATNDTLQMTESSVLTSGRCANECFLSQVEGRASTPEV
                     NSVLKSELKTSAVSGAIPIENRDLRQDVMLARSAGHYRGVTDPVELKRIIDCACANGV
                     VAFDCETDGLHPHDTRLVGFSICFQEAEAFYVPLIVPDVSLHTESTQCTCARSTNVET
                     EKECTEQHGVSASAVQDPAYVQAVMHQLRRLWNDETLTLVMHNGKFDYHVMHRAGVFE
                     HCACNIFDTMVAAWLLDPDRGTYGMDVLAASFFQIRTITFEEVVAKGQTFAHVPYECA
                     VRYAAEDADITFRLYHYLKLRLETAGLLSVFETIEMPLLPILARMEEVGIFLRKDVVQ
                     QLTRSFSDLIQQYEHDIFSLAGHEFNIGSPKQLQTVLFQELHLPPGKKNTQGYSTDHS
                     VLKKLARKHPIAEKILLFRDLSKLRSTYTESLAKLADQTGRVHTSFVQIGTATGRLSS
                     RNPNLQNIPIKSTEGRKIRQAFQATVGHELISADYTQIELVALAHLSQDRNLLNAFRQ
                     HIDIHALTAAYIFNVSIDDVQPAMRRIAKTINFGIVYGMSAFRLSDELKISQKEAQSF
                     IYRYFETYPGVYAFSTQVAEQTRKTGYVTSLAGRRRYIRTIDSRNTLERARAERMALN
                     TQIQSSAADIVKIAMIAIQRAFARRPLRAQLLLQVHDELIFEAPAAETAIVKEILFAE
                     MEHAVELSIPLRIHVESGNSWGDFH"ORIGIN              
1 gacgcataca cgctcctccc ctttagtaac acgctggtgt tggtggacgt cagcggtgca
       61 gagttgaaac aaattataga ggatgcattg cagtttgcac ttggtgatgg ttccacggga
      121 gccttcccct atggggcggg tgtccggtat gaagcgcgcc aagaaccaga tgaacatggc
      181 aaacgagtga taaagcttga ggtgcaaaaa aaagatggag cgtgggtgcc agtaaatgag
      241 cgcgcgccgt atcggttggg tgtgaactcg tacattgcgc ggggaaaaga cggatataaa
      301 acgctcggag agattgtcag tacgcgcgga gctgaggata cgtatctgcg tgatgcggag
      361 tctttgatta agtttttgcg tgcgcataaa aattttcgtg catacacaga ttccaatgtg
      421 atattccgtc ttaaatagta ggaagtaact tacattagag gcctgtaaag aactacgttc
      481 tttacaggct gtgccaatct gcttttccgg gaaagacaaa gggtatgcca cgttaggagc
      541 ggaaagaagg gtgctgcaca taaccttatc tttgcgattg accgtggtat actccttgca
      601 ccttatgcaa gagaaaaaaa cgctttacct tcttgatgcc tacggactta tttatcggag
      661 ttaccacgcg ttcgcgcgtg cgccgttgat taacgacagc ggtgcgaatg tttctgccgt
      721 atatggtttt tttcggagtt tgcacacgct cctgtgtcac tatcgacccc gttattttgt
      781 tgctgttttt gattctctca cgcctacctt tcggcacgta cagtacccag cctataaggc
      841 aaaaagggat aagacttctg cagagcttta tgcgcaaatt ccccttatcg aagaaatcct
      901 gtgtgcactg ggcattacag ttttgcgtca tgacggcttt gaagctgacg acctcattgc
      961 aaccctagca aaacgagttg cggctgagca ctgtcatgtt gtgattatct cctcagataa
     1021 agatgtactt cagcttgtgt gtgatacggt gcaagtgctc agacttgaca tagatcataa
     1081 gtggacatgt tgcgacgctg cgtacgtaca gcaacggtgg acggtcatgc caacacaatt
     1141 acttgatttg ttctctctca tgggagattc ctccgacaat gtgcctggtg tgagagggat
     1201 tggtcctaag acggctgcac atcttctcca ctgttttggc acacttgatg gtatttatcg
     1261 tcatacctat tccttaaaag aagcgctgcg cacgaagata gtgtgtggga agaaagatgc
     1321 atttttttct cgttcactca ttgagttgcg tgacgatgta ccatgtgttt tttcgctcga
     1381 agattcctgt tgtattccgc tcgatgtaac gtctgctgca cgtatttttg tgcgagaagg
     1441 attgcatgcg cttgcacaac aatatcgtgc ttgtgtgcaa gaaatagata cagaagcaac
     1501 aaacgataca ttacaaatga cagagtcttc tgtgctcacg tctggtcgat gtgcaaatga
     1561 gtgtttctta tctcaggtag aagggagggc tagtacaccg gaggtgaact ccgtattgaa
     1621 gtcggagttg aagacgagtg ctgtgtctgg cgccatacct atagaaaata gagatcttag
     1681 gcaggatgtt atgcttgcac gcagtgcagg tcattatcgt ggtgttactg accctgtaga
     1741 acttaaacgt attattgatt gcgcgtgtgc gaatggtgtg gtcgcgtttg attgtgaaac
     1801 ggatggattg catccgcacg atacacgtct ggtcggattt tcgatctgct ttcaggaagc
     1861 agaggctttt tatgttcctc ttattgttcc ggacgtttct cttcataccg agtcaactca
     1921 gtgtacatgt gcacgtagca ctaatgtcga gactgaaaag gagtgcacag aacagcatgg
     1981 ggtatctgca tctgctgtgc aggatccggc atatgtccaa gctgtcatgc accagcttcg
     2041 acgtctttgg aatgatgaga cgctcacact tgttatgcat aatggaaagt ttgattatca
     2101 cgttatgcat cgtgcaggcg tttttgagca ctgtgcatgt aatattttcg atacgatggt
     2161 tgcagcttgg ttgctggatc ccgatcgcgg tacatacggt atggatgtac ttgccgcatc
     2221 attctttcag atcagaacga ttacatttga agaagtggta gcaaaagggc aaacctttgc
     2281 gcacgtccct tatgagtgtg cagtccgcta tgcagcggag gatgcagata ttacttttcg
     2341 tttataccat tatttaaaac tccgcttgga aacagcagga ttgctttctg tgtttgagac
     2401 catagaaatg ccgcttttgc ctatcctagc acgtatggaa gaagtgggga tttttttacg
     2461 taaggatgtt gtgcagcagc tcactcgatc tttttcagat ttgatccagc agtacgagca
     2521 cgatattttt tctcttgccg gtcatgaatt taatattggt tctccgaagc aactgcagac
     2581 agtccttttt caagaattac atttaccgcc cggtaaaaag aatactcaag gttattctac
     2641 tgatcattct gtattgaaga aacttgcacg taagcatccc attgcagaaa aaatattgct
     2701 ctttagagat ctttcaaagt tacgttcgac gtataccgaa tcgcttgcaa aacttgctga
     2761 tcaaacaggg cgtgtacata ctagctttgt gcaaattggt accgcaactg gaaggctttc
     2821 gagtagaaat ccaaatttac aaaacattcc cattaaaagc acagaaggaa gaaaaataag
     2881 gcaggcgttt caagctactg ttgggcatga gttaatttcg gcagactata cacaaataga
     2941 gctggtcgcg ttggcccatc tatctcaaga tagaaatctt ctcaatgcat ttcgacagca
     3001 cattgatatt catgcattga ctgctgcata tattttcaat gtgtctatag acgatgtaca
     3061 acctgcaatg agaagaatcg caaaaactat taactttgga atcgtgtatg gaatgagcgc
     3121 ttttagattg agtgacgaac ttaaaatttc tcagaaggaa gcgcagagct tcatttaccg
     3181 ttattttgaa acgtacccgg gggtgtatgc ttttagtaca caggttgcag agcagacacg
     3241 taaaaccggc tatgtgacta gcttggctgg aagacgacgc tacatccgta ctatcgatag
     3301 tcgcaatacg cttgagcgcg cgcgtgccga acgtatggcg ttgaatactc aaattcagag
     3361 ttctgcggcg gatattgtga aaattgccat gatagcaatc cagcgtgcgt ttgcgcgccg
     3421 accgttacgt gcacaattgt tgctgcaggt acacgatgaa ttgatttttg aggcgccagc
     3481 tgctgagaca gcgatagtga aagaaattct ctttgctgag atggaacatg ctgttgagct
     3541 ctcgatcccg ctgcgtatac acgtggagtc tggaaatagt tggggtgatt ttcattagca
     3601 tacccatctg agggatgcaa cagggcacgt tatgaggtta cctcggcgcg tagttcctta
     3661 aaaaatgatg ctaccacgca caacataatc agcgctaaag gaaatgccgc aatgatggct
     3721 aaacttttca ggtgcatgag tgtggactgg gagaatatga gagaagcggg aaggagaatg
     3781 cacgcaaccg cccaaaacga tttcattatt tgacgtggtt cttctacccg gtgcaacgct
     3841 tttttgcgaa taggaagcga tgatgagcgt taatgcgtca aaagt
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