Influenza A virus (A/California gull/California/1196P/2013(H16N3)) hemagglutinin (HA) gene, complete cds
GenBank: CY177441.1
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LOCUS       CY177441                1730 bp    cRNA    linear   VRL 21-MAY-2014
DEFINITION  Influenza A virus (A/California gull/California/1196P/2013(H16N3))
            hemagglutinin (HA) gene, complete cds.
ACCESSION   CY177441
VERSION     CY177441.1
DBLINK      BioProject: PRJNA183620
KEYWORDS    .
SOURCE      Influenza A virus (A/California gull/California/1196P/2013(H16N3))
  ORGANISM  Influenza A virus (A/California gull/California/1196P/2013(H16N3))
            Viruses; Riboviria; Orthornavirae; Negarnaviricota;
            Polyploviricotina; Insthoviricetes; Articulavirales;
            Orthomyxoviridae; Alphainfluenzavirus.
REFERENCE   1  (bases 1 to 1730)
  AUTHORS   Lindsay,L.L., Plancarte,M., Brenn-White,M. and Boyce,W.M.
  TITLE     Complete genome sequences of the first reported california h16
            influenza a viruses
  JOURNAL   Genome Announc 2 (2) (2014)
   PUBMED   24786950
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1730)
  AUTHORS   Wentworth,D.E., Dugan,V., Halpin,R., Lin,X., Bera,J., Ghedin,E.,
            Fedorova,N., Overton,L., Tsitrin,T., Stockwell,T., Amedeo,P.,
            Bishop,B., Chen,H., Edworthy,P., Gupta,N., Katzel,D., Li,K.,
            Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Boyce,W.M.,
            Goldstein,T., Lindsay,L.L., Plancarte,M., Wheeler,S.S., Bao,Y.,
            Sanders,R., Dernovoy,D., Kiryutin,B., Lipman,D.J. and Tatusova,T.
  TITLE     The NIAID Influenza Genome Sequencing Project
  JOURNAL   Unpublished
REFERENCE   3  (bases 1 to 1730)
  CONSRTM   The NIAID Influenza Genome Sequencing Consortium
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAR-2014) on behalf of JCVI/UC Davis/NCBI, National
            Center for Biotechnology Information, NIH, Bethesda, MD 20894, USACOMMENT     This work was supported by the National Institute of Allergy and
            Infectious Diseases (NIAID), Genome Sequencing Centers for
            Infectious Diseases (GSCID) program.FEATURES             Location/Qualifiers     source          1..1730
                     /organism="Influenza A virus (A/California
                     gull/California/1196P/2013(H16N3))"
                     /mol_type="viral cRNA"
                     /strain="A/California gull/California/1196P/2013"
                     /serotype="H16N3"
                     /host="California gull; age Hatch year"
                     /bio_material="CEIRS#UCD13-01196-PA#"
                     /db_xref="taxon:1471086"
                     /segment="4"
                     /lab_host="E 1 passage(s)"
                     /country="USA: Mono County, CA"
                     /collection_date="09-Jul-2013"     misc_feature    1..1730
                     /db_xref="IRD:NIGSP_CEIRS_CIP032_WBC_00522.HA"     gene            23..1720
                     /gene="HA"     CDS             23..1720
                     /gene="HA"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="AHM98288.1"
                     /translation="MMVKVLYLLIIVLGRYSKADKICIGYLSNNSTDKVDTLTENGVP
                     VTSSVDLVETNHTGTYCSLNGISPVHLGDCSFEGWIVGNPSCATNINIREWSYLIEDP
                     NAPNKLCFPGELDNNGELRHLFSGVNSFSRTELISPSKWGAVLDGVTASCLDRGASSF
                     YRNLVWLVKQNERYPVVRGDYNNTTGRDVLVIWGIHHPDSEATATKLYVNKNPYTLVS
                     TKEWSKRYELEIGTRIGDGQKSWMKIYWHLMRPGERITFESNGGLLAPRYGYIIEKYG
                     SGRIFQSGVRMAKCNTKCQTSVGGINTNKTFQNIDRNALGECPKYIKSGQLKLATGLR
                     NVPSINGRGLFGAIAGFIEGGWPGLINGWYGFQHQNEQGTGIAADKASTQKAINEITT
                     KINNIIEKMNGNYDSIRGEFNQVEKRINMLADRVDDAVTDVWSYNAKLLVLLENGRTL
                     DLHDANVRNLHDQVKRVLKDNAIDEGNGCFNLLHKCNDSCMETIRNGTYNHEDYKEES
                     QLNRQEIEGIKLKTEDNVYKILSIYSCIASSTVLVGLILAFIMWACSSGNCRFNVCI"     sig_peptide     23..79
                     /gene="HA"     mat_peptide     80..1048
                     /gene="HA"
                     /product="HA1"     mat_peptide     1049..1717
                     /gene="HA"
                     /product="HA2"ORIGIN              
1 ggacattgtc aaaacagcag aaatgatggt caaggtgctc taccttctca tcatagtgtt
       61 gggcagatac tcaaaagcag acaaaatatg cataggatac ctgagcaata actcaacaga
      121 taaagtagat acactgacag aaaatggagt tcctgtgacc agctcagtgg accttgtaga
      181 aacaaaccat actggaacat actgctcatt gaatgggatc agcccggtcc atcttggtga
      241 ctgcagtttt gagggatgga ttgtagggaa tccctcctgt gccaccaaca tcaacataag
      301 agagtggtcg tatctaatcg aagatcctaa tgctcctaac aagctctgct tcccaggaga
      361 gttggataac aatggtgagc tgcggcacct tttcagtgga gtaaactctt ttagcaggac
      421 agaattgata agccccagca aatggggggc tgttctggat ggagtcactg cttcatgtct
      481 cgacagaggg gcaagcagtt tttacagaaa tctggtctgg ctggtaaaac agaatgagag
      541 atatcccgtt gtaagagggg attataacaa cacaacagga cgagatgttt tggtgatttg
      601 gggaatccac catccagatt cggaagcaac agccacaaaa ctatatgtca acaaaaaccc
      661 ctacacattg gtatcgacaa aagagtggag caaacgctat gagctcgaga tcgggaccag
      721 aataggtgac ggacaaaaga gttggatgaa aatatattgg cacctcatgc gccccggcga
      781 aaggataacg tttgagagca atggaggcct tctagccccc agatacggat atatcattga
      841 gaagtacggt tcaggaagaa ttttccagag tggagtgagg atggcaaaat gcaacacaaa
      901 gtgccaaacg tccgtaggtg gaataaacac caataaaact ttccagaaca tagacaggaa
      961 tgccctggga gaatgtccga agtacataaa gtctgggcaa ttaaaacttg ctactggcct
     1021 gagaaatgtc ccatccatta atggaagagg tctgtttggt gcaattgcag gattcataga
     1081 gggagggtgg cctggtctga tcaatgggtg gtatggtttc cagcatcaga atgaacaagg
     1141 gactggcatt gctgcagata aagcttccac ccagaaagca ataaatgaaa taacaacgaa
     1201 aattaacaac ataatagaaa agatgaacgg aaattatgat tcaataagag gagaattcaa
     1261 tcaagtagaa aagagaatca acatgctggc tgatcgagtt gatgatgcag taaccgatgt
     1321 ttggtcatac aatgctaaac ttcttgtact gcttgaaaat ggtagaacat tagacttgca
     1381 cgatgcaaat gtcagaaact tacatgatca ggtcaaaagg gtgttgaaag acaatgcaat
     1441 tgacgaagga aatggttgct tcaatcttct ccacaagtgc aacgactcat gcatggaaac
     1501 cattagaaat ggcacctaca atcatgaaga ttacaaggaa gaatcacaac tgaatagaca
     1561 ggaaattgag gggataaaac tgaaaactga agacaatgtt tataaaatac tatcgattta
     1621 tagctgcatt gcaagcagta ctgtactggt gggtctcata cttgcattta taatgtgggc
     1681 atgcagcagt ggtaattgcc ggttcaatgt gtgtatataa tcggaaaaaa
//
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